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Koistinen, Ina SchuppeORCID iD iconorcid.org/0000-0002-1423-3089
Publications (3 of 3) Show all publications
Dodig-Crnkovic, T., Hong, M.-G., Thomas, C. E., Häussler, R. S., Bendes, A., Dale, M., . . . Schwenk, J. M. (2020). Facets of individual-specific health signatures determined from longitudinal plasma proteome profiling. EBioMedicine, 57, Article ID 102854.
Open this publication in new window or tab >>Facets of individual-specific health signatures determined from longitudinal plasma proteome profiling
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2020 (English)In: EBioMedicine, E-ISSN 2352-3964, Vol. 57, article id 102854Article in journal (Refereed) Published
Abstract [en]

Background: Precision medicine approaches aim to tackle diseases on an individual level through molecular profiling. Despite the growing knowledge about diseases and the reported diversity of molecular phenotypes, the descriptions of human health on an individual level have been far less elaborate. Methods: To provide insights into the longitudinal protein signatures of well-being, we profiled blood plasma collected over one year from 101 clinically healthy individuals using multiplexed antibody assays. After applying an antibody validation scheme, we utilized > 700 protein profiles for in-depth analyses of the individuals’ short-term health trajectories. Findings: We found signatures of circulating proteomes to be highly individual-specific. Considering technical and longitudinal variability, we observed that 49% of the protein profiles were stable over one year. We also identified eight networks of proteins in which 11–242 proteins covaried over time. For each participant, there were unique protein profiles of which some could be explained by associations to genetic variants. Interpretation: This observational and non-interventional study identifyed noticeable diversity among clinically healthy subjects, and facets of individual-specific signatures emerged by monitoring the variability of the circulating proteomes over time. To enable more personal hence precise assessments of health states, longitudinal profiling of circulating proteomes can provide a valuable component for precision medicine approaches. Funding: This work was supported by the Erling Persson Foundation, the Swedish Heart and Lung Foundation, the Knut and Alice Wallenberg Foundation, Science for Life Laboratory, and the Swedish Research Council.

Place, publisher, year, edition, pages
Elsevier, 2020
Keywords
Affinity proteomics, Longitudinal profiling, Plasma proteomics, pQTLs, Precision medicine
National Category
Medical Biotechnology
Identifiers
urn:nbn:se:kth:diva-279339 (URN)10.1016/j.ebiom.2020.102854 (DOI)000552273800011 ()32629387 (PubMedID)2-s2.0-85087302422 (Scopus ID)
Note

QC 20200824

Available from: 2020-08-20 Created: 2020-08-20 Last updated: 2024-03-15Bibliographically approved
Abdellah, T., Gummesson, A., Zhong, W., Koistinen, I. S., Lakshmikanth, T., Olsson, L. M., . . . Fagerberg, L. (2020). Integration of molecular profiles in a longitudinal wellness profiling cohort. Nature Communications, 11(1), Article ID 4487.
Open this publication in new window or tab >>Integration of molecular profiles in a longitudinal wellness profiling cohort
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2020 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 11, no 1, article id 4487Article in journal (Refereed) Published
Place, publisher, year, edition, pages
Nature Publishing Group, 2020
Keywords
General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry
National Category
Bioinformatics and Computational Biology
Research subject
Biotechnology
Identifiers
urn:nbn:se:kth:diva-303344 (URN)10.1038/s41467-020-18148-7 (DOI)000607103200020 ()32900998 (PubMedID)2-s2.0-85090387884 (Scopus ID)
Note

QC 20211110

Available from: 2021-10-12 Created: 2021-10-12 Last updated: 2025-02-07Bibliographically approved
Neiman, M., Hellström, C., Just, D., Mattsson, C., Fagerberg, L., Schuppe-Koistinen, I., . . . Nilsson, P. (2019). Individual and stable autoantibody repertoires in healthy individuals. Autoimmunity, 52(1), 1-11
Open this publication in new window or tab >>Individual and stable autoantibody repertoires in healthy individuals
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2019 (English)In: Autoimmunity, ISSN 0891-6934, E-ISSN 1607-842X, Vol. 52, no 1, p. 1-11Article in journal (Refereed) Published
Abstract [en]

In the era towards precision medicine, we here present the individual specific autoantibody signatures of 193 healthy individuals. The self-reactive IgG signatures are stable over time in a way that each individual profile is recognized in longitudinal sampling. The IgG autoantibody reactivity towards an antigen array comprising 335 protein fragments, representing 204 human proteins with potential relevance to autoimmune disorders, was measured in longitudinal plasma samples from 193 healthy individuals. This analysis resulted in unique autoantibody barcodes for each individual that were maintained over one year's time. The reactivity profiles, or signatures, are person specific in regards to the number of reactivities and antigen specificity. Two independent data sets were consistent in that each healthy individual displayed reactivity towards 0-16 antigens, with a median of six. Subsequently, four selected individuals were profiled on in-house produced high-density protein arrays containing 23,000 protein fragments representing 14,000 unique protein coding genes. Based on a unique, broad and deep longitudinal profiling of autoantibody reactivities, our results demonstrate a unique autoreactive profile in each analyzed healthy individual. The need and interest for broad-ranged and high-resolution molecular profiling of healthy individuals is rising. We have here generated and assessed an initial perspective on the global distribution of the self-reactive IgG repertoire in healthy individuals, by investigating 193 well-characterized healthy individuals.

Place, publisher, year, edition, pages
TAYLOR & FRANCIS LTD, 2019
Keywords
Autoantibody repertoire, autoantibody profile, protein array, affinity proteomics, precision medicine
National Category
Biological Sciences
Identifiers
urn:nbn:se:kth:diva-249825 (URN)10.1080/08916934.2019.1581774 (DOI)000462921100001 ()30835561 (PubMedID)2-s2.0-85062520789 (Scopus ID)
Note

QC 20190423

Available from: 2019-04-23 Created: 2019-04-23 Last updated: 2024-03-15Bibliographically approved
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ORCID iD: ORCID iD iconorcid.org/0000-0002-1423-3089

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