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Inequality relations for NMR-based polymer homoblock analysis and extended application: Reanalysis of historical data on alginates, chitosans, homogalacturonans, and galactomannans
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Chemistry, Glycoscience. Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 1st Avenue South, Lethbridge, Alberta T1J 4B1, Canada.ORCID iD: 0000-0002-9129-6542
Department of Mechanical Engineering, École de technologie Supérieure, 1100 Notre-Dame Street West, Montreal, Quebec H3C 1K3, Canada.ORCID iD: 0000-0003-4489-9575
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Chemistry, Glycoscience. KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Centres, Wallenberg Wood Science Center. School of Pharmacy, College of Pharmacy, Taipei Medical University, 250 Wuxing Street, Taipei 11031, Taiwan.ORCID iD: 0000-0002-0968-5793
Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 1st Avenue South, Lethbridge, Alberta T1J 4B1, Canada.
2024 (English)In: Carbohydrate Research, ISSN 0008-6215, E-ISSN 1873-426X, Vol. 542, article id 109189Article in journal (Refereed) Published
Abstract [en]

There has been a long-standing bottleneck in the quantitative analysis of the frequencies of homoblock polyads beyond triads using 1H and 13C NMR for linear polysaccharides, primarily because monosaccharides within a long homoblock share similar chemical environments due to identical neighboring units, resulting in indistinct NMR peaks. In this study, through rigorous mathematical induction, inequality relations were established that enabled the calculation of frequency ranges of homoblock polyads from historically reported NMR-derived frequency values of diads and/or triads of alginates, chitosans, homogalacturonans, and galactomannans. The calculated homoblock frequency ranges were then applied to evaluate three chain growth statistical models, including the Bernoulli chain, first-order Markov chain, and second-order Markov chain, for predicting homoblock frequencies in these polysaccharides. Furthermore, based on the mathematically derived inequality relations, a novel 2D array was constructed, enabling the graphical visualization of homoblock features in polysaccharides. It was demonstrated, as a proof of concept, that the novel 2D array, along with a 1D code generated from it, could serve as an effective feature engineering tool for polymer classification using machine learning algorithms.

Place, publisher, year, edition, pages
Elsevier BV , 2024. Vol. 542, article id 109189
National Category
Structural Biology Bioinformatics (Computational Biology) Analytical Chemistry
Identifiers
URN: urn:nbn:se:kth:diva-347943DOI: 10.1016/j.carres.2024.109189ISI: 001267073800001PubMedID: 38971003Scopus ID: 2-s2.0-85197492517OAI: oai:DiVA.org:kth-347943DiVA, id: diva2:1872103
Note

QC 20240618

Available from: 2024-06-18 Created: 2024-06-18 Last updated: 2024-08-20Bibliographically approved

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Xing, XiaohuiHsieh, Yves S. Y.

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