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Enabling automated and reproducible spatially resolved transcriptomics at scale
KTH, Skolan för kemi, bioteknologi och hälsa (CBH), Genteknologi. KTH, Centra, Science for Life Laboratory, SciLifeLab.ORCID-id: 0000-0002-0210-7886
KTH, Skolan för kemi, bioteknologi och hälsa (CBH), Genteknologi.ORCID-id: 0000-0001-7198-5116
KTH, Centra, Science for Life Laboratory, SciLifeLab. KTH, Skolan för kemi, bioteknologi och hälsa (CBH), Genteknologi. (KTH Royal Inst Technol, Div Gene Technol, Sci Life Lab, Stockholm, Sweden.)ORCID-id: 0000-0003-0738-1574
2022 (engelsk)Inngår i: Heliyon, E-ISSN 2405-8440, Vol. 8, nr 6, s. e09651-, artikkel-id e09651Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Spatial information of tissues is an essential component to reach a holistic overview of gene expression mecha-nisms. The sequencing-based Spatial transcriptomics approach allows to spatially barcode the whole tran-scriptome of tissue sections using microarray glass slides. However, manual preparation of high-quality tissue sequencing libraries is time-consuming and subjected to technical variability. Here, we present an automated adaptation of the 10x Genomics Visium library construction on the widely used Agilent Bravo Liquid Handling Platform. Compared to the manual Visium library preparation, our automated approach reduces hands-on time by over 80% and provides higher throughput and robustness. Our automated Visium library preparation protocol provides a new strategy to standardize spatially resolved transcriptomics analysis of tissues at scale.

sted, utgiver, år, opplag, sider
Elsevier BV , 2022. Vol. 8, nr 6, s. e09651-, artikkel-id e09651
Emneord [en]
Spatial transcriptomics, Visium, Automation, RNA-sequencing, High-throughput, Library preparation
HSV kategori
Identifikatorer
URN: urn:nbn:se:kth:diva-316241DOI: 10.1016/j.heliyon.2022.e09651ISI: 000830207200004PubMedID: 35756107Scopus ID: 2-s2.0-85132315436OAI: oai:DiVA.org:kth-316241DiVA, id: diva2:1688664
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Not duplicate with DiVA 1639901QC 20220819

Tilgjengelig fra: 2022-08-19 Laget: 2022-08-19 Sist oppdatert: 2022-08-19bibliografisk kontrollert

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Stenbeck, LinneaTaborsak-Lines, FannyGiacomello, Stefania

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