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A human adipose tissue cell-type transcriptome atlas
Arctic Univ Norway, Translat Vasc Res, Dept Clin Med, N-9019 Tromso, Norway..
Arctic Univ Norway, Translat Vasc Res, Dept Clin Med, N-9019 Tromso, Norway..
Arctic Univ Norway, Translat Vasc Res, Dept Clin Med, N-9019 Tromso, Norway..
KTH, Skolan för kemi, bioteknologi och hälsa (CBH), Proteinvetenskap, Systembiologi. KTH, Centra, Science for Life Laboratory, SciLifeLab.ORCID-id: 0000-0002-0064-4776
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2022 (Engelska)Ingår i: Cell Reports, E-ISSN 2211-1247, Vol. 40, nr 2Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

The importance of defining cell-type-specific genes is well acknowledged. Technological advances facilitate high-resolution sequencing of single cells, but practical challenges remain. Adipose tissue is composed pri-marily of adipocytes, large buoyant cells requiring extensive, artefact-generating processing for separation and analysis. Thus, adipocyte data are frequently absent from single-cell RNA sequencing (scRNA-seq) data -sets, despite being the primary functional cell type. Here, we decipher cell-type-enriched transcriptomes from unfractionated human adipose tissue RNA-seq data. We profile all major constituent cell types, using 527 visceral adipose tissue (VAT) or 646 subcutaneous adipose tissue (SAT) samples, identifying over 2,300 cell-type-enriched transcripts. Sex-subset analysis uncovers a panel of male-only cell-type-enriched genes. By resolving expression profiles of genes differentially expressed between SAT and VAT, we identify mesothelial cells as the primary driver of this variation. This study provides an accessible method to profile cell-type-enriched transcriptomes using bulk RNA-seq, generating a roadmap for adipose tissue biology.

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Elsevier BV , 2022. Vol. 40, nr 2
Nationell ämneskategori
Medicinsk bioteknologi
Identifikatorer
URN: urn:nbn:se:kth:diva-316127DOI: 10.1016/j.celrep.2022.111046ISI: 000827457300006PubMedID: 35830816Scopus ID: 2-s2.0-85133963373OAI: oai:DiVA.org:kth-316127DiVA, id: diva2:1686638
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QC 20220810

Tillgänglig från: 2022-08-10 Skapad: 2022-08-10 Senast uppdaterad: 2024-01-17Bibliografiskt granskad

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Zwahlen, Martinvon Feilitzen, KalleOdeberg, JacobUhlén, MathiasDusart, PhilipButler, Lynn M.

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Zwahlen, Martinvon Feilitzen, KalleOdeberg, JacobUhlén, MathiasDusart, PhilipButler, Lynn M.
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SystembiologiScience for Life Laboratory, SciLifeLabCellulär och klinisk proteomik
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Cell Reports
Medicinsk bioteknologi

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