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Preclinical X-ray imaging beyond attenuation contrast
KTH, School of Engineering Sciences (SCI), Applied Physics, Biomedical and X-ray Physics.ORCID iD: 0000-0002-7674-6437
2022 (English)Doctoral thesis, comprehensive summary (Other academic)Alternative title
Preklinisk röntgenavbildning bortom attenueringskontrast (Swedish)
Abstract [en]

Medical imaging is a cornerstone of modern clinical practice. Here, X-ray imaging is the given choice for rapid morphological imaging with excellent spatial resolution, albeit with sensitivity often insufficient for resolving subtle pathological changes to soft tissues. Fundamentally, the sensitivity issue is due to the image contrast traditionally being based on differential X-ray attenuation (i.e., absorption and scattering) where attenuation properties of soft tissues are often very similar. Improving the sensitivity of clinical X-ray imaging therefore requires moving beyond conventional attenuation contrast.

Motivated by the above, this Thesis explores two alternative contrast mechanisms in the preclinical domain, yet with a clinical outlook: X-ray fluorescence and X-ray phase contrast. These mechanisms are demonstrated both experimentally on animal models (in vivo) and computationally on virtual anatomical phantoms (in silico). Specifically, we developed instrumentation for in vivo X-ray fluorescence imaging of mice injected with nanoparticle contrast agents, demonstrating a path towards molecular X-ray imaging with higher spatial resolution (< 0.5 mm) than established molecular modalities (e.g., PET & SPECT) and roughly 10× higher sensitivity (~ 0.1 mM) compared to conventional attenuation contrast. Furthermore, we showed that the terminal bronchioles (diameters down to ~ 60 μm) could be resolved in free-breathing mice under anesthesia using X-ray imaging boosted by phase contrast. Lastly, we showed through in silico modeling that the extension of X-ray phase contrast to human lungs could potentially enable visualization of small airways (diameters below 2 mm) which are invisible to attenuation contrast alone. In summary, this Thesis provides experimental and computational demonstrations indicating that both X-ray fluorescence and X-ray phase contrast could provide a path towards clinical X-ray imaging with improved sensitivity.

Abstract [sv]

Medicinsk avbildning är en viktig grundsten inom modern klinisk praktik. Här är röntgenavbildning det givna valet för snabb strukturell avbildning med hög upplösning, dock med en känslighet som oftast inte räcker för att upplösa små patologiska förändringar inom mjuka vävnader. Känslighetsproblemet grundar sig i att kontrasten i traditionella röntgenbilder uppstår genom skillnader i attenuering av röntgenstrålningen (p.g.a. absorption och spridning) där attenueringsegenskaperna hos olika vävnader oftast är väldigt lika. Förbättring av känsligheten hos röntgenavbildning kräver därmed att man ser bortom attenueringskontrast.

Mot denna bakgrund undersöker föreliggande avhandling två alternativa kontrastmekanismer i en preklinisk kontext men med klinisk tillämpning i sikte: röntgenfluorescens och faskontraströntgen. Dessa mekanismer demonstreras både experimentellt på djurmodeller (in vivo) samt med beräkningar på virtuella anatomiska fantomer (in silico). Bland annat demonstrerade vi experimentell avbildning med  röntgenfluorescens på möss in vivo injicerade med nanopartiklar som kontrastmedel som ett koncept för molekylär röntgenavbildning med högre spatial upplösning (< 0.5 mm) än nuvarande molekylära avbildningsmodaliteter (t.ex. PET & SPECT) samt en faktor 10× högre känslighet (~ 0.1 mM) jämfört med traditionell attenueringskontrast. Vidare visade vi att de minsta bronkiolerna (med diametrar ner till 60 μm) kunde upplösas i möss under anestesi utan mekanisk ventilering genom avbildning med faskontraströntgen. Slutligen visade vi med in silico modellering att faskontraströntgen tillämpat på människolungor skulle kunna ha potential för att visualisera små luftvägar (med diametrar under 2 mm) som är osynliga genom enbart attenueringskontrast. Sammanfattningsvis innehåller denna avhandling experiment och beräkningar som indikerar att både röntgenfluorescens och faskontraströntgen är lovande kontrastmekanismer för klinisk röntgenavbildning med förbättrad känslighet.

Place, publisher, year, edition, pages
Stockholm: KTH Royal Institute of Technology, 2022. , p. 44
Series
TRITA-SCI-FOU ; 2022:07
National Category
Radiology, Nuclear Medicine and Medical Imaging
Research subject
Physics; Physics, Biological and Biomedical Physics
Identifiers
URN: urn:nbn:se:kth:diva-310183ISBN: 978-91-8040-176-0 (print)OAI: oai:DiVA.org:kth-310183DiVA, id: diva2:1646647
Public defence
2022-04-22, Room 4204, Hus 3, Albano campus, Hannes Alfvéns väg 12, Stockholm, 10:00 (English)
Opponent
Supervisors
Available from: 2022-03-23 Created: 2022-03-23 Last updated: 2022-06-25Bibliographically approved
List of papers
1. Focused anti-scatter grid for background reduction in x-ray fluorescence tomography
Open this publication in new window or tab >>Focused anti-scatter grid for background reduction in x-ray fluorescence tomography
2018 (English)In: Optics Letters, ISSN 0146-9592, E-ISSN 1539-4794, Vol. 43, no 11, p. 2591-2594Article in journal (Refereed) Published
Abstract [en]

X-ray fluorescence (XRF) tomography is an emerging imaging technology with the potential for high spatial resolution molecular imaging. One of the key limitations is the background noise due to Compton scattering since it degrades the signal and limits the sensitivity. In this Letter, we present a linear focused anti-scatter grid that reduces the Compton scattering background. An anti-scatter grid was manufactured and evaluated both experimentally and theoretically with Monte Carlo simulations. The measurements showed a 31% increase in signal-to-background ratio, and simulations of an improved grid showed that this can easily be extended up to > 75%. Simulated tomographies using the improved grid show a large improvement in reconstruction quality. The anti-scatter grid will be important for in vivo XRF tomography since the background reduction allows for faster scan times, lower doses, and lower nanoparticle concentrations.

Place, publisher, year, edition, pages
OPTICAL SOC AMER, 2018
National Category
Physical Sciences
Identifiers
urn:nbn:se:kth:diva-230827 (URN)10.1364/OL.43.002591 (DOI)000433963300043 ()29856437 (PubMedID)2-s2.0-85048058307 (Scopus ID)
Note

QC 20180619

Available from: 2018-06-19 Created: 2018-06-19 Last updated: 2024-03-18Bibliographically approved
2. Quantitative predictions in small-animal X-ray fluorescence tomography
Open this publication in new window or tab >>Quantitative predictions in small-animal X-ray fluorescence tomography
2019 (English)In: Biomedical Optics Express, E-ISSN 2156-7085, Vol. 10, no 8, p. 3773-3788, article id 364926Article in journal (Refereed) Published
Abstract [en]

X-ray fluorescence (XRF) tomography from nanoparticles (NPs) shows promise for high-spatial-resolution molecular imaging in small-animals. Quantitative reconstruction algorithms aim to reconstruct the true distribution of NPs inside the small-animal, but so far there has been no feasible way to predict signal levels or evaluate the accuracy of reconstructions in realistic scenarios. Here we present a GPU-based computational model for small-animal XRF tomography. The unique combination of a highly accelerated Monte Carlo tool combined with an accurate small-animal phantom allows unprecedented realistic full-body simulations. We use this model to simulate our experimental system to evaluate the quantitative performance and accuracy of our reconstruction algorithms on large-scale organs as well as mm-sized tumors. Furthermore, we predict the detection limits for sub-mm tumors at realistic NP concentrations. The computational model will be a valuable tool for optimizing next-generation experimental arrangements and reconstruction algorithms.

Place, publisher, year, edition, pages
Optical Society of America, 2019
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:kth:diva-262546 (URN)10.1364/BOE.10.003773 (DOI)000478097400005 ()31452974 (PubMedID)2-s2.0-85070837935 (Scopus ID)
Note

QC 20191021

Available from: 2019-10-21 Created: 2019-10-21 Last updated: 2025-02-20Bibliographically approved
3. Longitudinal In-Vivo X-Ray Fluorescence Computed Tomography With Molybdenum Nanoparticles
Open this publication in new window or tab >>Longitudinal In-Vivo X-Ray Fluorescence Computed Tomography With Molybdenum Nanoparticles
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2020 (English)In: IEEE Transactions on Medical Imaging, ISSN 0278-0062, E-ISSN 1558-254X, Vol. 39, no 12, p. 3910-3919Article in journal (Refereed) Published
Abstract [en]

X-ray fluorescence computed tomography (XFCT) with nanoparticles (NPs) as contrast agents shows potential for molecular biomedical imaging with higher spatial resolution than present methods. To date the technique has been demonstrated on phantoms and mice, however, parameters such as radiation dose, exposure times and sensitivity have not yet allowed for high-spatial-resolution in vivo longitudinal imaging, i.e., imaging of the same animal at different time points. Here we show in vivo XFCT with spatial resolution in the 200-400 mu m range in a proof-of-principle longitudinal study where mice are imaged five times each during an eight-week period following tail-vein injection of NPs. We rely on a 24 keV x-ray pencil-beam-based excitation of in-house-synthesized molybdenum oxide NPs (MoO2) to provide the high signal-to-background x-ray fluorescence detection necessary for XFCT imaging with low radiation dose and short exposure times. We quantify the uptake and clearance of NPs in vivo through imaging, and monitor animal well-being over the course of the study with support from histology and DNA stability analysis to assess the impact of x-ray exposure and NPs on animal welfare. We conclude that the presented imaging arrangement has potential for in vivo longitudinal studies, putting emphasis on designing biocompatible NPs as the future focus for active-targeting preclinical XFCT.

Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE), 2020
Keywords
Biomedical imaging, computed tomography (CT), in vivo, molecular imaging, nanoparticles, preclinical imaging, X-ray fluorescence computed tomography (XFCT)
National Category
Clinical Medicine
Identifiers
urn:nbn:se:kth:diva-288623 (URN)10.1109/TMI.2020.3007165 (DOI)000595547500014 ()32746133 (PubMedID)2-s2.0-85094927067 (Scopus ID)
Note

QC 20210112

Available from: 2021-01-12 Created: 2021-01-12 Last updated: 2024-03-18Bibliographically approved
4. Optical and X-ray Fluorescent Nanoparticles for Dual Mode Bioimaging
Open this publication in new window or tab >>Optical and X-ray Fluorescent Nanoparticles for Dual Mode Bioimaging
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2021 (English)In: ACS Nano, ISSN 1936-0851, E-ISSN 1936-086X, Vol. 15, no 3, p. 5077-5085Article in journal (Refereed) Published
Abstract [en]

Nanoparticle (NP) based contrast agents detectable via different imaging modalities (multimodal properties) provide a promising strategy for noninvasive diagnostics. Core-shell NPs combining optical and X-ray fluorescence properties as bioimaging contrast agents are presented. NPs developed earlier for X-ray fluorescence computed tomography (XFCT), based on ceramic molybdenum oxide (MoO2) and metallic rhodium (Rh) and ruthenium (Ru), are coated with a silica (SiO2) shell, using ethanolamine as the catalyst. The SiO2 coating method introduced here is demonstrated to be applicable to both metallic and ceramic NPs. Furthermore, a fluorophore (Cy5.5 dye) was conjugated to the SiO2 layer, without altering the morphological and size characteristics of the hybrid NPs, rendering them with optical fluorescence properties. The improved biocompatibility of the SiO2 coated NPs without and with Cy5.5 is demonstrated in vitro by Real-Time Cell Analysis (RTCA) on a macrophage cell line (RAW 264.7). The multimodal characteristics of the core-shell NPs are confirmed with confocal microscopy, allowing the intracellular localization of these NPs in vitro to be tracked and studied. In situ XFCT successfully showed the possibility of in vivo multiplexed bioimaging for multitargeting studies with minimum radiation dose. Combined optical and X-ray fluorescence properties empower these NPs as effective macroscopic and microscopic imaging tools.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2021
Keywords
core-shell nanoparticles, silica coated nanoparticles, fluorescent dye doping, contrast agent, bioimaging, X-ray fluorescence, XFCT
National Category
Physical Chemistry
Identifiers
urn:nbn:se:kth:diva-294011 (URN)10.1021/acsnano.0c10127 (DOI)000634569100116 ()33587608 (PubMedID)2-s2.0-85101569288 (Scopus ID)
Note

QC 20210507

Available from: 2021-05-07 Created: 2021-05-07 Last updated: 2024-02-22Bibliographically approved
5. In Silico Phase-Contrast X-Ray Imaging of Anthropomorphic Voxel-Based Phantoms
Open this publication in new window or tab >>In Silico Phase-Contrast X-Ray Imaging of Anthropomorphic Voxel-Based Phantoms
2021 (English)In: IEEE Transactions on Medical Imaging, ISSN 0278-0062, E-ISSN 1558-254X, Vol. 40, no 2, p. 539-548Article in journal (Refereed) Published
Abstract [en]

Propagation-based phase-contrast X-ray imaging is an emerging technique that can improve dose efficiency in clinical imaging. In silico tools are key to understanding the fundamental imaging mechanisms and develop new applications. Here, due to the coherent nature of the phase-contrast effects, tools based on wave propagation (WP) are preferred over Monte Carlo (MC) based methods. WP simulations require very high wave-front sampling which typically limits simulations to small idealized objects. Virtual anthropomorphic voxel-based phantoms are typically provided with a resolution lower than imposed sampling requirements and, thus, cannot be directly translated for use in WP simulations. In the present paper we propose a general strategy to enable the use ofthese phantoms for WP simulations. The strategy is basedon upsampling in the 3D domain followed by projection resulting in high-resolution maps of the projected thickness for each phantom material. These maps can then be efficiently used for simulations of Fresnel diffraction to generate in silico phase-contrast X-ray images. We demonstrate the strategy on an anthropomorphic breast phantom to simulate propagation-based phase-contrast mammography using a laboratory micro-focus X-ray source.

Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE), 2021
National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:kth:diva-289582 (URN)10.1109/TMI.2020.3031318 (DOI)000615044900008 ()33055024 (PubMedID)2-s2.0-85100649580 (Scopus ID)
Note

QC 20210204

Available from: 2021-02-04 Created: 2021-02-04 Last updated: 2024-03-15Bibliographically approved
6. Phase-contrast X-ray tomography resolves the terminal bronchioles in free-breathing mice
Open this publication in new window or tab >>Phase-contrast X-ray tomography resolves the terminal bronchioles in free-breathing mice
Show others...
2021 (English)In: Communications Physics, E-ISSN 2399-3650, Vol. 4, no 1, article id 259Article in journal (Refereed) Published
Abstract [en]

Mechanical ventilation of living animals is routinely used to achieve high-resolution pulmonary imaging, but this can damage the subject. Here, an alternative, free-breathing method enables X-ray tomography with 30 mu m resolution. Phase-contrast X-ray lung imaging has broken new ground in preclinical respiratory research by improving contrast at air/tissue interfaces. To minimize blur from respiratory motion, intubation and mechanical ventilation is commonly employed for end-inspiration gated imaging at synchrotrons and in the laboratory. Inevitably, the prospect of ventilation induced lung injury (VILI) renders mechanical ventilation a confounding factor in respiratory studies of animal models. Here we demonstrate proof-of-principle 3D imaging of the tracheobronchial tree in free-breathing mice without mechanical ventilation at radiation levels compatible with longitudinal studies. We use a prospective gating approach for end-expiration propagation-based phase-contrast X-ray imaging where the natural breathing of the mouse dictates the acquisition flow. We achieve intrapulmonary spatial resolution in the 30-mu m-range, sufficient for resolving terminal bronchioles in the 60-mu m-range distinguished from the surrounding lung parenchyma. These results should enable non-invasive longitudinal studies of native state murine airways for translational lung disease research in the laboratory.

Place, publisher, year, edition, pages
Springer Nature, 2021
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:kth:diva-306755 (URN)10.1038/s42005-021-00760-8 (DOI)000728576700002 ()2-s2.0-85120954409 (Scopus ID)
Note

QC 20220104

Available from: 2022-01-04 Created: 2022-01-04 Last updated: 2022-06-25Bibliographically approved
7. Phase-contrast chest radiography
Open this publication in new window or tab >>Phase-contrast chest radiography
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(English)Manuscript (preprint) (Other academic)
Abstract [en]

Respiratory X-ray imaging with phase contrast leads to improved sensitivity, as demonstrated in animal models to date. The translation to humans is limited by currently available technology, leaving the future clinical impact of the technique an open question. Here we demonstrate phase-contrast chest radiography using a proof-of-principle in silico framework. Specifically, we apply our previously developed preprocessing strategy to state-of-the-art realistic virtual human torso phantoms, then generate virtual chest radiographs through wave-propagation simulations. From a blind reader study conducted with clinical radiologists, we predict that phase contrast edge-enhancement has negligible impact for pulmonary nodule detection (6-20 mm). However, edge-enhancement of bronchial walls can visualize small airways (< 2 mm) invisible in conventional radiography. Our results predict that phase-contrast chest radiography could play a future role in diagnosis of small-airway obstruction (e.g., in asthma or chronic obstructive pulmonary disease) thereby motivating the experimental development needed for clinical translation.

National Category
Radiology, Nuclear Medicine and Medical Imaging
Research subject
Physics; Physics, Biological and Biomedical Physics
Identifiers
urn:nbn:se:kth:diva-310180 (URN)
Note

QC 20220404

Available from: 2022-03-23 Created: 2022-03-23 Last updated: 2022-06-25Bibliographically approved

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