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eChem: A Notebook Exploration of Quantum Chemistry
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Chemistry, Theoretical Chemistry and Biology.ORCID iD: 0000-0002-3770-9780
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Chemistry, Theoretical Chemistry and Biology.ORCID iD: 0000-0001-9883-3569
Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University, 87-100 Toruń, Poland.ORCID iD: 0000-0003-1671-8298
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Chemistry, Theoretical Chemistry and Biology.ORCID iD: 0000-0003-4219-0036
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2023 (English)In: Journal of Chemical Education, ISSN 0021-9584, E-ISSN 1938-1328, Vol. 100, no 4, p. 1664-1671Article in journal (Refereed) Published
Abstract [en]

The eChem project features an e-book published as a web page (10.30746/978-91-988114-0-7), collecting a repository of Jupyter notebooks developed for the dual purpose of explaining and exploring the theory underlying computational chemistry in a highly interactive manner as well as providing a tutorial-based presentation of the complex workflows needed to simulate embedded molecular systems of real biochemical and/or technical interest. For students ranging from beginners to advanced users, the eChem book is well suited for self-directed learning, but workshops led by experienced instructors and targeting student bodies with specific needs and interests can readily be formed from its components. This has been done by using eChem as the base for a workshop directed toward graduate students learning the theory and practices of quantum chemistry, resulting in very positive assessment of the interactive nature of this framework. The members of the eChem team are engaged in both education and research, and as a mirroring activity, we develop the open-source software upon which this e-book is predominantly based. The overarching vision and goal of our work is to provide a science- and education-enabling software platform for quantum molecular modeling on contemporary and future high-performance computing systems, and to document the resulting development and workflows in the eChem book.

Place, publisher, year, edition, pages
American Chemical Society (ACS) , 2023. Vol. 100, no 4, p. 1664-1671
Keywords [en]
chemistry education, computational chemistry, interactive, Jupyter, notebook, Python, theoretical chemistry, visualization
National Category
Chemical Sciences Learning
Identifiers
URN: urn:nbn:se:kth:diva-331091DOI: 10.1021/acs.jchemed.2c01103ISI: 000954538900001Scopus ID: 2-s2.0-85150424886OAI: oai:DiVA.org:kth-331091DiVA, id: diva2:1780264
Note

QC 20230705

Available from: 2023-07-05 Created: 2023-07-05 Last updated: 2024-03-15Bibliographically approved

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Fransson, ThomasDelcey, Mickael GBrumboiu, Iulia EmiliaHodecker, ManuelLi, XinRinkevicius, ZilvinasNorman, Patrick

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Fransson, ThomasDelcey, Mickael GBrumboiu, Iulia EmiliaHodecker, ManuelLi, XinRinkevicius, ZilvinasDreuw, AndreasRhee, Young MinNorman, Patrick
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Theoretical Chemistry and Biology
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