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The 6-phosphofructokinase reaction in Acetivibrio thermocellus is both ATP- and pyrophosphate-dependent
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Industrial Biotechnology.ORCID iD: 0000-0001-9047-8507
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Industrial Biotechnology.ORCID iD: 0000-0001-7590-2752
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Industrial Biotechnology.ORCID iD: 0000-0001-5121-4920
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Industrial Biotechnology.ORCID iD: 0000-0001-5319-7511
2024 (English)In: Metabolic engineering, ISSN 1096-7176, E-ISSN 1096-7184, Vol. 86, p. 41-54Article in journal (Refereed) Published
Abstract [en]

Acetivibrio thermocellus (formerly Clostridium thermocellum) is a potential platform for lignocellulosic ethanol production. Its industrial application is hampered by low product titres, resulting from a low thermodynamic driving force of its central metabolism. It possesses both a functional ATP- and a functional PPi-dependent 6-phosphofructokinase (PPi-Pfk), of which only the latter is held responsible for the low driving force. Here we show that, following the replacement of PPi-Pfk by cytosolic pyrophosphatase and transaldolase, the native ATP-Pfk is able to carry the full glycolytic flux. Interestingly, the barely-detectable in vitro ATP-Pfk activities are only a fraction of what would be required, indicating its contribution to glycolysis has consistently been underestimated. A kinetic model demonstrated that the strong inhibition of ATP-Pfk by PPi can prevent futile cycling that would arise when both enzymes are active simultaneously. As such, there seems to be no need for a long-sought-after PPi-generating mechanism to drive glycolysis, as PPi-Pfk can simply use whatever PPi is available, and ATP-Pfk complements the rest of the PFK-flux. Laboratory evolution of the ΔPPi-Pfk strain, unable to valorize PPi, resulted in a mutation in the GreA transcription elongation factor. This mutation likely results in reduced RNA-turnover, hinting at transcription as a significant (and underestimated) source of anabolic PPi. Together with other mutations, this resulted in an A. thermocellus strain with the hitherto highest biomass-specific cellobiose uptake rate of 2.2 g/gx/h. These findings are both relevant for fundamental insight into dual ATP/PPi Pfk-nodes, which are not uncommon in other microorganisms, as well as for further engineering of A. thermocellus for consolidated bioprocessing.

Place, publisher, year, edition, pages
Elsevier BV , 2024. Vol. 86, p. 41-54
Keywords [en]
6-Phosphofructokinase, Acetivibrio thermocellus, Clostridium thermocellum, Futile cycle, Kinetic model, Pyrophosphatase, Pyrophosphate, Transaldolase
National Category
Biochemistry Molecular Biology
Identifiers
URN: urn:nbn:se:kth:diva-353421DOI: 10.1016/j.ymben.2024.09.002ISI: 001316861700001PubMedID: 39245400Scopus ID: 2-s2.0-85203514791OAI: oai:DiVA.org:kth-353421DiVA, id: diva2:1899094
Note

QC 20241011

Available from: 2024-09-19 Created: 2024-09-19 Last updated: 2025-02-20Bibliographically approved

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Koendjbiharie, Jeroen GirwarKuil, TeunNurminen, Carolus M.K.van Maris, Antonius J. A.

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