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The human liver-specific proteome defined by transcriptomics and antibody-based profiling
KTH, Skolan för bioteknologi (BIO), Proteomik och nanobioteknologi. KTH, Centra, Science for Life Laboratory, SciLifeLab.ORCID-id: 0000-0003-0198-7137
KTH, Skolan för bioteknologi (BIO), Proteomik och nanobioteknologi. KTH, Centra, Science for Life Laboratory, SciLifeLab.
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2014 (Engelska)Ingår i: The FASEB Journal, ISSN 0892-6638, E-ISSN 1530-6860, Vol. 28, nr 7, s. 2901-2914Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Human liver physiology and the genetic etiology of the liver diseases can potentially be elucidated through the identification of proteins with enriched expression in the liver. Here, we combined data from RNA sequencing (RNA-Seq) and antibody-based immunohistochemistry across all major human tissues to explore the human liver proteome with enriched expression, as well as the cell type-enriched expression in hepatocyte and bile duct cells. We identified in total 477 protein-coding genes with elevated expression in the liver: 179 genes have higher expression as compared to all the other analyzed tissues; 164 genes have elevated transcript levels in the liver shared with at least one other tissue type; and an additional 134 genes have a mild level of increased expression in the liver. We identified the precise localization of these proteins through antibody-based protein profiling and the subcellular localization of these proteins through immunofluorescent-based profiling. We also identified the biological processes and metabolic functions associated with these proteins, investigated their contribution in the occurrence of liver diseases, and identified potential targets for their treatment. Our study demonstrates the use of RNA-Seq and antibody-based immunohistochemistry for characterizing the human liver proteome, as well as the use of tissue-specific proteins in identification of novel drug targets and discovery of biomarkers.

Ort, förlag, år, upplaga, sidor
2014. Vol. 28, nr 7, s. 2901-2914
Nyckelord [en]
immunohistochemistry, RNA sequencing, metabolism
Nationell ämneskategori
Biokemi och molekylärbiologi Cellbiologi
Identifikatorer
URN: urn:nbn:se:kth:diva-148366DOI: 10.1096/fj.14-250555ISI: 000337949400015PubMedID: 24648543Scopus ID: 2-s2.0-84903688978OAI: oai:DiVA.org:kth-148366DiVA, id: diva2:736395
Forskningsfinansiär
Knut och Alice Wallenbergs StiftelseEU, FP7, Sjunde ramprogrammet, HEALTH-F4-2008-201648/PROSPECTSScience for Life Laboratory - a national resource center for high-throughput molecular bioscience
Anmärkning

QC 20140806

Tillgänglig från: 2014-08-06 Skapad: 2014-08-05 Senast uppdaterad: 2020-03-09Bibliografiskt granskad

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Fagerberg, LinnLundberg, EmmaUhlén, Mathias

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Fagerberg, LinnHallström, Björn M.Lundberg, EmmaNielsen, JensUhlén, Mathias
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Proteomik och nanobioteknologiScience for Life Laboratory, SciLifeLabGenteknologi
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The FASEB Journal
Biokemi och molekylärbiologiCellbiologi

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