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A flow-through nanoporous alumina trypsin bioreactor for mass spectrometry peptide fingerprinting
KTH, School of Biotechnology (BIO). Uppsala University, Sweden.ORCID iD: 0000-0001-5199-0663
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2018 (English)In: Journal of Proteomics, ISSN 1874-3919, E-ISSN 1876-7737, Vol. 172, p. 165-172Article in journal (Refereed) Published
Abstract [en]

Mass spectrometry-based proteomics benefits from efficient digestion of protein samples. In this study, trypsin was immobilized on nanoporous anodized alumina membranes to create an enzyme reactor suitable for peptide mass fingerprinting. The membranes were derivatized with 3-aminopropyltriethoxysilane and the amino groups were activated with carbonyldiimidazole to allow coupling of porcine trypsin via c-amino groups. The function was assessed using the artificial substrate Na-Benzoyl-L-arginine 4-nitroanilide hydrochloride, bovine ribonuclease A and a human plasma sample. A 10-membrane flow-through reactor was used for fragmentation and MS analysis after a single pass of substrate both by collection of product and subsequent off-line analysis, and by coupling on-line to the instrument. The peptide pattem allowed correct identification of the single target protein in both cases, and of > 70 plasma proteins in single pass mode followed by LC-MS analysis. The reactor retained 76% of the initial activity after 14 days of storage and repeated use at room temperature. Significance: This manuscript describes the design of a stable enzyme reactor that allows efficient and fast digestion with negligible leakage of enzyme and enzyme fragments. The high stability facilitates the use in an online-setup with MS detection since it allows the processing of multiple samples within an extended period of time without replacement.

Place, publisher, year, edition, pages
Elsevier, 2018. Vol. 172, p. 165-172
Keywords [en]
Nanoporous aluminum oxide, Immobilization, Trypsin, Peptide mass fingerprinting, On-line digestion, ESI-TOF-MS, Enzyme stability
National Category
Biochemistry and Molecular Biology
Identifiers
URN: urn:nbn:se:kth:diva-223261DOI: 10.1016/j.jprot.2017.09.008ISI: 000423655300016PubMedID: 28942014Scopus ID: 2-s2.0-85032355956OAI: oai:DiVA.org:kth-223261DiVA, id: diva2:1183378
Funder
Swedish Research Council, 2005-3308Magnus Bergvall Foundation, 2015-01200 201601675Åke Wiberg Foundation, M14-0127Carl Tryggers foundation , CST 15:57
Note

QC 20180216

Available from: 2018-02-16 Created: 2018-02-16 Last updated: 2018-02-16Bibliographically approved

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Ramachandraiah, Harisha

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