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Protein allocation and utilization in the versatile chemolithoautotroph Cupriavidus necator
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Protein Science, Systems Biology. KTH, Centres, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0002-3913-153X
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Protein Science, Systems Biology. KTH, Centres, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0002-7569-6597
KTH, Centres, Science for Life Laboratory, SciLifeLab. KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Protein Science, Systems Biology.ORCID iD: 0000-0001-7745-720X
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Protein Science. KTH, Centres, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0001-8947-2562
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2021 (English)In: eLIFE, E-ISSN 2050-084X, Vol. 10, article id e69019Article in journal (Refereed) Published
Abstract [en]

Bacteria must balance the different needs for substrate assimilation, growth functions, and resilience in order to thrive in their environment. Of all cellular macromolecules, the bacterial proteome is by far the most important resource and its size is limited. Here, we investigated how the highly versatile 'knallgas' bacterium Cupriavidus necator reallocates protein resources when grown on different limiting substrates and with different growth rates. We determined protein quantity by mass spectrometry and estimated enzyme utilization by resource balance analysis modeling. We found that C. necator invests a large fraction of its proteome in functions that are hardly utilized. Of the enzymes that are utilized, many are present in excess abundance. One prominent example is the strong expression of CBB cycle genes such as Rubisco during growth on fructose. Modeling and mutant competition experiments suggest that CO2-reassimilation through Rubisco does not provide a fitness benefit for heterotrophic growth, but is rather an investment in readiness for autotrophy.

Place, publisher, year, edition, pages
eLIFE SCIENCES PUBL LTD , 2021. Vol. 10, article id e69019
Keywords [en]
Cupriavidus necator, Ralstonia eutropha, resource balance analysis, substrate limitation, co2 fixation, gene fitness, Other
National Category
Biochemistry Molecular Biology
Identifiers
URN: urn:nbn:se:kth:diva-307024DOI: 10.7554/eLife.69019ISI: 000730627000001PubMedID: 34723797Scopus ID: 2-s2.0-85120872983OAI: oai:DiVA.org:kth-307024DiVA, id: diva2:1626458
Note

See also peer review documents at DOI 10.7554/eLife.69019.sa0  10.7554/eLife.69019.sa1  10.7554/eLife.69019.sa2

QC 20220111

Available from: 2022-01-11 Created: 2022-01-11 Last updated: 2025-02-20Bibliographically approved

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Jahn, MichaelCrang, NickJanasch, MarkusHober, AndreasForsström, BjörnAsplund-Samuelsson, JohannesHudson, Elton P.

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Jahn, MichaelCrang, NickJanasch, MarkusHober, AndreasForsström, BjörnKimler, KyleMattausch, AlexanderChen, QiAsplund-Samuelsson, JohannesHudson, Elton P.
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Systems BiologyScience for Life Laboratory, SciLifeLabProtein Science
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