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An evaluation of a FluoroSpot assay as a diagnostic tool to determine SARS-CoV-2 specific T cell responses
Uppsala Univ, Dept Pharmaceut Biosci, Sci Life Lab, Uppsala, Sweden..ORCID iD: 0000-0002-1355-2678
Danderyd Hosp, Karolinska Inst, Dept Clin Sci, Stockholm, Sweden..ORCID iD: 0000-0003-1671-8183
Uppsala Univ, Dept Pharmaceut Biosci, Sci Life Lab, Uppsala, Sweden..
Uppsala Univ, Dept Med Cell Biol, Sci Life Lab, Uppsala, Sweden..
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2021 (English)In: PLOS ONE, E-ISSN 1932-6203, Vol. 16, no 9, article id e0258041Article in journal (Refereed) Published
Abstract [en]

Numerous assays evaluating serological and cellular responses have been developed to characterize immune responses against SARS-CoV-2. Serological assays are both cost- and time-effective compared to cellular assays, but cellular immune responses may provide a diagnostic value to determine previous SARS-CoV-2 infection in seronegative individuals. However, potential cross-reactive T cell responses stemming from prior encounters with human coronaviruses (HCoVs) may affect assay specificity. In this study, we evaluated the specificity and sensitivity of a SARS-CoV-2 IFN-gamma Release Assay (IGRA) based on the FluoroSpot method employing commercially available SARS-CoV-2-specific peptide pools, as well as an in-house designed SARS-CoV-2 peptide pool restricted to 5 amino acid stretches or less aligning with endemic HCoVs. Blood samples were obtained from healthcare workers (HCW) 5-6 months post SARS-CoV-2 spike (S) IgG and nucleocapsid (N) IgG dual seroconversion (n = 187) and HCW who had been S IgG and N IgG dual seronegative at repeated occasions, including the current sampling time point (n = 102). In addition, samples were obtained 4 to 5 months post infection from 55 polymerase chain reaction (PCR)-confirmed COVID-19 patients. Assay specificity and sensitivity were calculated with serology as a reference standard for HCW. The in-house generated peptide pool displayed a specificity of 96.1%, while the commercially available peptide pools displayed specificities of 80.4% and 85.3%, respectively. Sensitivity was higher in a cohort of previously hospitalized COVID-19 patients (96.4% and 84.0% for the commercially available peptide pools and 92.7% for the in-house generated peptide pool) compared to the HCW cohort (92.0% and 66.8% for the commercially available peptide pools and 76.0% for the in-house generated peptide pool). Based on these findings, the individual diagnostic value of T cell immune responses against SARS-CoV-2 currently appears to be limited but remain an important research tool ahead.

Place, publisher, year, edition, pages
Public Library of Science (PLoS) , 2021. Vol. 16, no 9, article id e0258041
National Category
Infectious Medicine Immunology in the medical area
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URN: urn:nbn:se:kth:diva-307758DOI: 10.1371/journal.pone.0258041ISI: 000743903000072PubMedID: 34591918Scopus ID: 2-s2.0-85116045965OAI: oai:DiVA.org:kth-307758DiVA, id: diva2:1636180
Note

QC 20220209

Available from: 2022-02-09 Created: 2022-02-09 Last updated: 2022-06-25Bibliographically approved

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Jernbom Falk, AugustNilsson, PeterHober, Sophia

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Mangsbo, Sara M.Havervall, SebastianJernbom Falk, AugustNilsson, PeterHober, Sophia
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