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p Advances and Utility of the Human Plasma Proteome
Inst Syst Biol, Seattle, WA 98109 USA..ORCID iD: 0000-0001-8732-0928
Inst Syst Biol, Seattle, WA 98109 USA.;Univ Michigan, Sch Publ Hlth, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.;Univ Michigan, Sch Publ Hlth, Dept Internal Med & Human Genet, Ann Arbor, MI 48109 USA..ORCID iD: 0000-0002-8976-6074
Inst Syst Biol, Seattle, WA 98109 USA..ORCID iD: 0000-0003-3324-6851
Inst Syst Biol, Seattle, WA 98109 USA..ORCID iD: 0000-0002-7406-3982
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2021 (English)In: Journal of Proteome Research, ISSN 1535-3893, E-ISSN 1535-3907, Vol. 20, no 12, p. 5241-5263Article, review/survey (Refereed) Published
Abstract [en]

The study of proteins circulating in blood offers tremendous opportunities to diagnose, stratify, or possibly prevent diseases. With recent technological advances and the urgent need to understand the effects of COVID19, the proteomic analysis of blood-derived serum and plasma has become even more important for studying human biology and pathophysiology. Here we provide views and perspectives about technological developments and possible clinical applications that use mass-spectrometry(MS)- or affinity-based methods. We discuss examples where plasma proteomics contributed valuable insights into SARS-CoV-2 infections, aging, and hemostasis and the opportunities offered by combining proteomics with genetic data. As a contribution to the Human Proteome Organization (HUPO) Human Plasma Proteome Project (HPPP), we present the Human Plasma PeptideAtlas build 2021-07 that comprises 4395 canonical and 1482 additional nonredundant human proteins detected in 240 MS-based experiments. In addition, we report the new Human Extracellular Vesicle PeptideAtlas 2021-06, which comprises five studies and 2757 canonical proteins detected in extracellular vesicles circulating in blood, of which 74% (2047) are in common with the plasma PeptideAtlas. Our overview summarizes the recent advances, impactful applications, and ongoing challenges for translating plasma proteomics into utility for precision medicine.

Place, publisher, year, edition, pages
American Chemical Society (ACS) , 2021. Vol. 20, no 12, p. 5241-5263
Keywords [en]
proteomics, mass spectrometry, blood, plasma, Human Proteome Project, Human Plasma Proteome Project, PeptideAtlas, proximity extension assays (PEA by Olink), DNA aptamers (Somascan)
National Category
Biochemistry Molecular Biology
Identifiers
URN: urn:nbn:se:kth:diva-309071DOI: 10.1021/acs.jproteome.1c00657ISI: 000744124200003PubMedID: 34672606Scopus ID: 2-s2.0-85118769438OAI: oai:DiVA.org:kth-309071DiVA, id: diva2:1640969
Note

QC 20220228

Available from: 2022-02-28 Created: 2022-02-28 Last updated: 2025-02-20Bibliographically approved

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Schwenk, Jochen M.

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