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Brain surface reconstruction from mri images based on segmentation networks applying signed distance maps
KTH, School of Electrical Engineering and Computer Science (EECS), Intelligent systems, Robotics, Perception and Learning, RPL.
2021 (English)In: Proceedings - International Symposium on Biomedical Imaging, Institute of Electrical and Electronics Engineers (IEEE) , 2021, p. 1164-1168Conference paper, Published paper (Refereed)
Abstract [en]

Whole-brain surface extraction is an essential topic in medical imaging systems as it provides neurosurgeons with a broader view of surgical planning and abnormality detection. To solve the problem confronted in current deep learning skull stripping methods lacking prior shape information, we propose a new network architecture that incorporates knowledge of signed distance fields and introduce an additional Laplacian loss to ensure that the prediction results retain shape information. We validated our newly proposed method by conducting experiments on our brain magnetic resonance imaging dataset (111 patients). The evaluation results demonstrate that our approach achieves comparable dice scores and also reduces the Hausdorff distance and average symmetric surface distance, thus producing more stable and smooth brain isosurfaces.

Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE) , 2021. p. 1164-1168
Keywords [en]
Brain surface reconstruction, Segmentation, Signed distance maps, Deep learning, Image reconstruction, Image segmentation, Magnetic resonance imaging, Network architecture, Abnormality detection, Evaluation results, Hausdorff distance, Shape information, Signed distance, Signed distance fields, Surgical planning, Symmetric surfaces, Medical imaging
National Category
Medical Imaging
Identifiers
URN: urn:nbn:se:kth:diva-309673DOI: 10.1109/ISBI48211.2021.9434070ISI: 000786144100244Scopus ID: 2-s2.0-85107192049OAI: oai:DiVA.org:kth-309673DiVA, id: diva2:1645069
Conference
18th IEEE International Symposium on Biomedical Imaging, ISBI 2021, 13 April 2021 through 16 April 2021
Note

Part of proceedings: ISBN 978-1-6654-1246-9

QC 20220524

Available from: 2022-03-16 Created: 2022-03-16 Last updated: 2025-02-09Bibliographically approved

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Fang, Heng

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CiteExportLink to record
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Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf