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Antibody Validation for Estrogen Receptor Beta
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Protein Science, Cellular and Clinical Proteomics. KTH, Centres, Science for Life Laboratory, SciLifeLab. Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden. (Williams)ORCID iD: 0000-0002-5876-0710
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2022 (English)In: Methods in Molecular Biology, ISSN 1064-3745, E-ISSN 1940-6029, Vol. 2418, p. 1-23Article in journal (Refereed) Published
Abstract [en]

Antibodies can cross-react with proteins other than their intended targets, and antibody-based applications can, if not properly validated, lead to flawed interpretations. When evaluating 13 anti-estrogen receptor beta (ERβ) antibodies in 2017, we concluded that only one of them was specific. Applying this antibody in immunohistochemistry of over 44 different normal human tissues and 20 types of cancers revealed ERβ expression in only a few selected tissues. This aligned with mRNA evidence but contradicted a large set of published literature. ERβ protein expression continues to be reported in tissues without clear support by mRNA expression. In this chapter, we describe how ERβ antibodies can be thoroughly validated and discuss selection of well-characterized positive and negative controls. The validation scheme presented is applicable for immunohistochemistry and Western blotting. The protocol includes evaluation of mRNA evidence, use of public databases, assessment of on- and off-target binding, and an optional step for corroboration with immunoprecipitation and mass spectrometry.

Place, publisher, year, edition, pages
Springer Nature , 2022. Vol. 2418, p. 1-23
Keywords [en]
Antibody, Estrogen receptor beta, Immunohistochemistry, RNA-Seq, Validation, Western blotting
National Category
Cell and Molecular Biology
Research subject
Biotechnology
Identifiers
URN: urn:nbn:se:kth:diva-312639DOI: 10.1007/978-1-0716-1920-9_1PubMedID: 35119656Scopus ID: 2-s2.0-85124174059OAI: oai:DiVA.org:kth-312639DiVA, id: diva2:1659452
Funder
Swedish Research Council
Note

QC 20220601

Available from: 2022-05-19 Created: 2022-05-19 Last updated: 2022-06-25Bibliographically approved

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Birgersson, MadeleineWilliams, Cecilia

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