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Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks
KTH, School of Computer Science and Communication (CSC), Numerical Analysis and Computer Science, NADA.
2007 (English)In: IET Systems Biology, ISSN 1751-8849, Vol. 1, no 5, 280-285 p.Article in journal (Refereed) Published
Abstract [en]

The large-scale shape and function of metabolic networks are intriguing topics of systems biology. Such networks are on one hand commonly regarded as modular (i.e. built by a number of relatively independent subsystems), but on the other hand they are robust in a way not necessarily expected of a purely modular system. To address this question, we carefully discuss the partition of metabolic networks into subnetworks. The practice of preprocessing such networks by removing the most abundant substances, 'currency metabolites', is formalized into a network-based algorithm. We study partitions for metabolic networks of many organisms and find cores of currency metabolites and modular peripheries of what we call 'commodity metabolites'. The networks are found to be more modular than random networks but far from perfectly divisible into modules. We argue that cross-modular edges are the key for the robustness of metabolism.

Place, publisher, year, edition, pages
2007. Vol. 1, no 5, 280-285 p.
Keyword [en]
decomposition, organization, world
National Category
Medical Biotechnology
Identifiers
URN: urn:nbn:se:kth:diva-16964DOI: 10.1049/iet-syb:20060077ISI: 000249616500005PubMedID: 17907676Scopus ID: 2-s2.0-34548425218OAI: oai:DiVA.org:kth-16964DiVA: diva2:335007
Note
1st International Conference on Computational Systems Biology (ICCSB) Location: Shanghai, China, Date: JUL 20-23, 2006Available from: 2010-08-05 Created: 2010-08-05 Last updated: 2011-09-13Bibliographically approved

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