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NMR Spin-Spin Coupling Constants in Polymethine Dyes as Polarity Indicators
KTH, School of Biotechnology (BIO), Theoretical Chemistry and Biology.ORCID iD: 0000-0003-0185-5724
KTH, School of Biotechnology (BIO), Theoretical Chemistry and Biology.
KTH, School of Biotechnology (BIO), Theoretical Chemistry and Biology. (Swedish E-Science Research Center)ORCID iD: 0000-0003-2729-0290
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2012 (English)In: Chemistry - A European Journal, ISSN 0947-6539, E-ISSN 1521-3765, Vol. 18, no 37, 11677-11684 p.Article in journal (Refereed) Published
Abstract [en]

Herein, we explore the use of spinspin coupling constants (SSCCs) in merocyanine (MCYNE) dyes as indicators of polarity. For this purpose, we use CarParrinello hybrid quantum mechanics/molecular mechanics (QM/MM) to determine the structures of MCYNE in solvents of different polarity, followed by computations of the SSCCs by using QM/MM linear-response theory. The molecular geometry of MCYNE switches between neutral, cyanine-like, and zwitterionic depending on the polarity of the solvent. This structural variation is clearly reflected in the proton SSCCs in the polymethine backbone, which are highly sensitive to the dielectric nature of the environment; this mechanism can be used as a polarity indicator for different microenvironments. This result is highlighted by computing the SSCCs of the MCYNE probe in the cavity of the beta-lactoglobulin protein. The computed SSCCs clearly indicate a non-polar hydrophobic dielectric nature of this cavity.

Place, publisher, year, edition, pages
2012. Vol. 18, no 37, 11677-11684 p.
Keyword [en]
dyes, merocyanines, NMR spectroscopy, polarity, structure elucidation
National Category
Chemical Sciences
Identifiers
URN: urn:nbn:se:kth:diva-102901DOI: 10.1002/chem.201200270ISI: 000308313100025Scopus ID: 2-s2.0-84865746711OAI: oai:DiVA.org:kth-102901DiVA: diva2:558605
Funder
Swedish e‐Science Research Center
Note

QC 20121004

Available from: 2012-10-04 Created: 2012-09-28 Last updated: 2017-12-07Bibliographically approved

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Natarajan Arul, MuruganÅgren, Hans

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