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Aligning coding DNA in the presence of frame-shift errors
KTH, Superseded Departments, Numerical Analysis and Computer Science, NADA.
1997 (English)In: Combinatorial Pattern Matching, 1997, 180-190 p.Conference paper, Published paper (Other academic)
Abstract [en]

The problem of aligning two DNA sequences with respect to the fact that they are coding for proteins is discussed. Criteria for a good alignment of coding DNA, together with an algorithm that satisfies them, are presented. The algorithm is robust against frame-shifts and forgiving towards silent substitutions. The important choice of objective function is examined and several variants are proposed.

Place, publisher, year, edition, pages
1997. 180-190 p.
National Category
Bioinformatics (Computational Biology)
Identifiers
URN: urn:nbn:se:kth:diva-39801OAI: oai:DiVA.org:kth-39801DiVA: diva2:567411
Conference
Combinatorial Pattern Matching, Aarhus, Denmark, 1997
Note

QC 20121113

Available from: 2012-11-13 Created: 2011-09-13 Last updated: 2012-11-13Bibliographically approved

Open Access in DiVA

fulltext(548 kB)210 downloads
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Type fulltextMimetype application/pdf

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