Change search
ReferencesLink to record
Permanent link

Direct link
The C-terminal cavity of the Na,K-ATPase analyzed by docking and electrophysiology
KTH, School of Engineering Sciences (SCI), Theoretical Physics. (Swedish E-Science Research Center (SeRC))
KTH, School of Engineering Sciences (SCI), Theoretical Physics, Theoretical & Computational Biophysics. (Swedish E-Science Research Center (SeRC))ORCID iD: 0000-0002-2734-2794
Show others and affiliations
2013 (English)In: Molecular membrane biology, ISSN 0968-7688, E-ISSN 1464-5203, Vol. 30, no 2, 195-205 p.Article in journal (Refereed) Published
Abstract [en]

The Na,K-ATPase is essential to all animals, since it maintains the electrochemical gradients that energize the plasma membrane. Naturally occurring inhibitors of the pump from plants have been used pharmaceutically in cardiac treatment for centuries. The inhibitors block the pump by binding on its extracellular side and thereby locking it. To explore the possibilities for designing an alternative way of targeting the pump function, we have examined the structural requirements for binding to a pocket that accommodates the two C-terminal residues, YY, in the crystal structures of the pump. To cover the sample space of two residues, we first performed docking studies with the 400 possible dipeptides. For validation of the in silico predictions, pumps with 13 dipeptide sequences replacing the C-terminal YY were expressed in Xenopus laevis oocytes and examined with electrophysiology. Our data show a significant correlation between the docking scores from two different methods and the experimentally determined sodium affinities, which strengthens the previous hypothesis that sodium binding is coupled to docking of the C-terminus. From the dipeptides that dock the best and better than wild-type YY, it may therefore be possible to develop specific drugs targeting a previously unexplored binding pocket in the sodium pump.

Place, publisher, year, edition, pages
2013. Vol. 30, no 2, 195-205 p.
Keyword [en]
Na, K-ATPase, drug target, regulation, electrophysiology, docking, C-terminus
National Category
Biochemistry and Molecular Biology
URN: urn:nbn:se:kth:diva-119726DOI: 10.3109/09687688.2012.713520ISI: 000315183900009OAI: diva2:612787
EU, European Research Council, 209825Swedish e‐Science Research Center

QC 20130325

Available from: 2013-03-25 Created: 2013-03-21 Last updated: 2013-03-25Bibliographically approved

Open Access in DiVA

No full text

Other links

Publisher's full text

Search in DiVA

By author/editor
Apostolov, RossenLindahl, Erik
By organisation
Theoretical PhysicsTheoretical & Computational Biophysics
In the same journal
Molecular membrane biology
Biochemistry and Molecular Biology

Search outside of DiVA

GoogleGoogle Scholar
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

Altmetric score

Total: 27 hits
ReferencesLink to record
Permanent link

Direct link