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Peptide retention time prediction
KTH, Centres, Science for Life Laboratory, SciLifeLab.
KTH, Centres, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0001-5689-9797
2016 (English)In: Mass spectrometry reviews (Print), ISSN 0277-7037, E-ISSN 1098-2787Article in journal (Refereed) PublishedText
Abstract [en]

Most methods for interpreting data from shotgun proteomics experiments are to large degree dependent on being able to predict properties of peptide-ions. Often such predicted properties are limited to molecular mass and fragment spectra, but here we put focus on a perhaps underutilized property, a peptide's chromatographic retention time. We review a couple of different principles of retention time prediction,and their applications within computational proteomics.

Place, publisher, year, edition, pages
2016.
Keyword [en]
Bioinformatics, Chromatography, Mass spectrometry, Peptides, Regression analysis, Forecasting, Molecular biology, Proteins, Chromatographic retention time, Computational proteomics, Peptide ions, Retention time prediction, Shotgun proteomics
National Category
Biological Sciences
Identifiers
URN: urn:nbn:se:kth:diva-186776DOI: 10.1002/mas.21488ScopusID: 2-s2.0-84956866259OAI: oai:DiVA.org:kth-186776DiVA: diva2:932435
Note

QC 20160601

Available from: 2016-06-01 Created: 2016-05-13 Last updated: 2016-06-01Bibliographically approved

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Moruz, LuminitaKäll, Lukas
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