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  • 1.
    Brusini, Irene
    et al.
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Biomedical Engineering and Health Systems, Medical Imaging. Department of Neurobiology Care Sciences and Society, Karolinska Institutet Stockholm Sweden.
    Platten, Michael
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH). Department of Neuroradiology Karolinska University Hospital Stockholm Sweden;Department of Clinical Neuroscience Karolinska Institutet Stockholm Sweden.
    Ouellette, Russell
    Department of Neuroradiology Karolinska University Hospital Stockholm Sweden;Department of Clinical Neuroscience Karolinska Institutet Stockholm Sweden.
    Piehl, Fredrik
    Department of Clinical Neuroscience Karolinska Institutet Stockholm Sweden;Department of Neurology Karolinska University Hospital Stockholm Sweden;Center for Neurology, Academic Specialist Center Stockholm Health Services Stockholm Sweden.
    Wang, Chunliang
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Biomedical Engineering and Health Systems, Medical Imaging.
    Granberg, Tobias
    Department of Neuroradiology Karolinska University Hospital Stockholm Sweden;Department of Clinical Neuroscience Karolinska Institutet Stockholm Sweden.
    Automatic deep learning multicontrast corpus callosum segmentation in multiple sclerosis2022In: Journal of Neuroimaging, ISSN 1051-2284, E-ISSN 1552-6569Article in journal (Refereed)
  • 2. Mangeat, G.
    et al.
    Ouellette, R.
    Wabartha, M.
    De Leener, B.
    Plattén, Michael
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH). Karolinska Inst, Dept Clin Neurosci; Karolinska Univ Hosp.
    Karrenbauer, V.
    Warntjes, M.
    Stikov, N.
    Mainero, C.
    Cohen-Adad, J.
    Granberg, T.
    Machine Learning and Multiparametric Brain MRI to Differentiate Hereditary Diffuse Leukodystrophy with Spheroids from Multiple Sclerosis2020In: Journal of Neuroimaging, ISSN 1051-2284, E-ISSN 1552-6569, Vol. 30, no 5, p. 674-682Article in journal (Refereed)
    Abstract [en]

    BACKGROUND AND PURPOSE: Hereditary diffuse leukoencephalopathy with spheroids (HDLS) and multiple sclerosis (MS) are demyelinating and neurodegenerative disorders that can be hard to distinguish clinically and radiologically. HDLS is a rare disorder compared to MS, which has led to occurrent misdiagnosis of HDLS as MS. That is problematic since their prognosis and treatment differ. Both disorders are investigated by MRI, which could help to identify patients with high probability of having HDLS, which could guide targeted genetic testing to confirm the HDLS diagnosis. METHODS: Here, we present a machine learning method based on quantitative MRI that can achieve a robust classification of HDLS versus MS. Four HDLS and 14 age-matched MS patients underwent a quantitative brain MRI protocol (synthetic MRI) at 3 Tesla (T) (scan time '7 minutes). We also performed a repeatability analysis of the predicting features to assess their generalizability by scanning a healthy control with five scan-rescans at 3T and 1.5T. RESULTS: Our predicting features were measured with an average confidence interval of 1.7% (P =.01), at 3T and 2.3% (P =.01) at 1.5T. The model gave a 100% correct classification of the cross-validation data when using 5-11 predicting features. When the maximum measurement noise was inserted in the model, the true positive rate of HDLS was 97.2%, while the true positive rate of MS was 99.6%. CONCLUSIONS: This study suggests that computer-assistance in combination with quantitative MRI may be helpful in aiding the challenging differential diagnosis of HDLS versus MS. 

  • 3. Mickeviciute, G. -C
    et al.
    Valiuskyte, M.
    Platten, Michael
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH).
    Wszolek, Z. K.
    Andersen, O.
    Danylaité Karrenbauer, V.
    Ineichen, B. V.
    Granberg, T.
    Neuroimaging phenotypes of CSF1R-related leukoencephalopathy: Systematic review, meta-analysis, and imaging recommendations2022In: Journal of Internal Medicine, ISSN 0954-6820, E-ISSN 1365-2796, Vol. 291, no 3, p. 269-282Article in journal (Refereed)
    Abstract [en]

    Colony-stimulating factor 1 receptor (CSF1R)-related leukoencephalopathy is a rare but fatal microgliopathy. The diagnosis is often delayed due to multifaceted symptoms that can mimic several other neurological disorders. Imaging provides diagnostic clues that help identify cases. The objective of this study was to integrate the literature on neuroimaging phenotypes of CSF1R-related leukoencephalopathy. A systematic review and meta-analysis were performed for neuroimaging findings of CSF1R-related leukoencephalopathy via PubMed, Web of Science, and Embase on 25 August 2021. The search included cases with confirmed CSF1R mutations reported under the previous terms hereditary diffuse leukoencephalopathy with spheroids, pigmentary orthochromatic leukodystrophy, and adult-onset leukoencephalopathy with axonal spheroids and pigmented glia. In 78 studies providing neuroimaging data, 195 cases were identified carrying CSF1R mutations in 14 exons and five introns. Women had a statistically significant earlier age of onset (p = 0.041, 40 vs 43 years). Mean delay between symptom onset and neuroimaging was 2.3 years. Main magnetic resonance imaging (MRI) findings were frontoparietal white matter lesions, callosal thinning, and foci of restricted diffusion. The hallmark computed tomography (CT) finding was white matter calcifications. Widespread cerebral hypometabolism and hypoperfusion were reported using positron emission tomography and single-photon emission computed tomography. In conclusion, CSF1R-related leukoencephalopathy is associated with progressive white matter lesions and brain atrophy that can resemble other neurodegenerative/-inflammatory disorders. However, long-lasting diffusion restriction and parenchymal calcifications are more specific findings that can aid the differential diagnosis. Native brain CT and brain MRI (with and without a contrast agent) are recommended with proposed protocols and pictorial examples are provided. 

  • 4. Ouellette, R.
    et al.
    Mangeat, G.
    Polyak, I.
    Warntjes, M.
    Forslin, Y.
    Bergendal, Å.
    Platten, Michael
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Biomedical Engineering and Health Systems. Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden ; Department of Neuroradiology, Karolinska University Hospital, Stockholm, Sweden.
    Uppman, M.
    Treaba, C. A.
    Cohen-Adad, J.
    Piehl, F.
    Kristoffersen Wiberg, M.
    Fredrikson, S.
    Mainero, C.
    Granberg, T.
    Validation of Rapid Magnetic Resonance Myelin Imaging in Multiple Sclerosis2020In: Annals of Neurology, ISSN 0364-5134, E-ISSN 1531-8249, Vol. 87, no 5, p. 710-724Article in journal (Refereed)
    Abstract [en]

    Objective: Magnetic resonance imaging (MRI) is essential for multiple sclerosis diagnostics but is conventionally not specific to demyelination. Myelin imaging is often hampered by long scanning times, complex postprocessing, or lack of clinical approval. This study aimed to assess the specificity, robustness, and clinical value of Rapid Estimation of Myelin for Diagnostic Imaging, a new myelin imaging technique based on time-efficient simultaneous T1/T2 relaxometry and proton density mapping in multiple sclerosis. Methods: Rapid myelin imaging was applied using 3T MRI ex vivo in 3 multiple sclerosis brain samples and in vivo in a prospective cohort of 71 multiple sclerosis patients and 21 age/sex-matched healthy controls, with scan–rescan repeatability in a subcohort. Disability in patients was assessed by the Expanded Disability Status Scale and the Symbol Digit Modalities Test at baseline and 2-year follow-up. Results: Rapid myelin imaging correlated with myelin-related stains (proteolipid protein immunostaining and Luxol fast blue) and demonstrated good precision. Multiple sclerosis patients had, relative to controls, lower normalized whole-brain and normal-appearing white matter myelin fractions, which correlated with baseline cognitive and physical disability. Longitudinally, these myelin fractions correlated with follow-up physical disability, even with correction for baseline disability. Interpretation: Rapid Estimation of Myelin for Diagnostic Imaging provides robust myelin quantification that detects diffuse demyelination in normal-appearing tissue in multiple sclerosis, which is associated with both cognitive and clinical disability. Because the technique is fast, with automatic postprocessing and US Food and Drug Administration/CE clinical approval, it can be a clinically feasible biomarker that may be suitable to monitor myelin dynamics and evaluate treatments aiming at remyelination.

  • 5.
    Platten, Michael
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Biomedical Engineering and Health Systems, Medical Imaging. Karolinska Institutet.
    Quantitative MRI Biomarkers of Neurodegeneration in Multiple Sclerosis2022Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Background: Multiple sclerosis (MS) is a chronic neuroinflammatory and neurodegenerative disease that targets myelin in the brain and spinal cord. The corpus callosum connects the cerebral hemispheres and is composed of heavily myelinated axons. Atrophy of the corpus callosum has been explored as a more sensitive marker of disease status and neurodegeneration relative to other neuroanatomical structures. However, development of more accurate, precise and less labor demanding tools for characterizing callosal atrophy would increase its potential as a proxy marker of MS evolution.

    Purpose: The primary objective of this thesis was to evaluate and develop quantitative methods for measuring neurodegeneration in MS with a focus on the corpus callosum. This was achieved through the comparison of the accuracy and precision of manual delineation, conventional volumetric methods, and machine learning approaches.

    Study I: In a prospective study, 9 MS patients underwent scan/re-scanning with and without repositioning to measure the precision and accuracy of manual versus volumetric cross-sectional and longitudinal FreeSurfer analyses. While the longitudinal stream of FreeSurfer revealed the highest precision, the overall limitations on accuracy warrants caution.

    Study II: In a prospective study, 553 MS patients with 704 2D T2-weighted MRI acquisitions were used to train and validate a machine learning algorithm for segmenting a marker of neurodegeneration. The algorithm quickly produced highly accurate segmentations of the corpus callosum and brain (Dice Coefficient: 89% and 98%, respectively). The algorithm had numerically higher correlations to neurologic disability as compared to FreeSurfer.

    Study III: Analogous to Study II, in a prospective study, 631 MS patients with 3D T1-weighted and T2-weighted FLAIR acquisitions were used to train and validate a machine learning algorithm for segmenting the mid-sagittal normalized corpus callosum area. The algorithm performed better with T1-weighted scans and less atrophied patients. Scanner parameters had no significant effect on the T1-weighted output. The algorithm produced segmentations in less than a minute per scan, with similar correlations to neurologic disability, as compared to FreeSurfer.

    Study IV: In a prospective study, 92 MS patients acquired both 3 and 7 Tesla brain MRI scans to reveal the lobe-specific lesion volumes’ association to corpus callosum atrophy, where lesion burden was found to be greatest in the frontal and parietal lobes. In addition, the posterior portions of the corpus callosum provided the strongest fit linear regression models, with a combination of white matter lesions and intracortical lesions predicting atrophy.

    Conclusions: Creating and evaluating novel tools for measuring neurodegeneration over time is important both for monitoring disease progression and to evaluate therapeutic responses with current drugs. As novel therapeutic strategies appear, it may also help in assessing neuroregenerative approaches.

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  • 6.
    Platten, Michael
    et al.
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH). Karolinska Inst, Clin Neurosci, Stockholm, Sweden..
    Andersson, Oskar
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH).
    Stawiarz, L.
    Karolinska Inst, Clin Neurosci, Stockholm, Sweden..
    Hillert, J.
    Karolinska Inst, Clin Neurosci, Stockholm, Sweden..
    Piehl, F.
    Karolinska Inst, Clin Neurosci, Stockholm, Sweden..
    Wang, C.
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH).
    Granberg, T.
    Karolinska Inst, Clin Neurosci, Stockholm, Sweden..
    Measuring neurodegeneration in multiple sclerosis with automatic segmentations of Corpus callosum based on deep learning2019In: Multiple Sclerosis Journal, ISSN 1352-4585, E-ISSN 1477-0970, Vol. 25, p. 691-691Article in journal (Other academic)
  • 7.
    Platten, Michael
    et al.
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH).
    Chowdhury, Manish
    KTH, School of Technology and Health (STH), Medical Engineering, Medical Image Processing and Visualization.
    Smedby, Örjan
    KTH, School of Technology and Health (STH), Medical Engineering, Medical Imaging.
    Moreno, Rodrigo
    KTH, School of Technology and Health (STH), Medical Engineering, Medical Imaging.
    Estimation of trabecular thickness in grayscale: an in vivo study2017In: ESSR 2017 / P-0196, 2017Conference paper (Refereed)
  • 8.
    Platten, Michael
    et al.
    KTH. Karolinska Inst, Stockholm, Sweden..
    Martola, J.
    Karolinska Inst, Stockholm, Sweden..
    Fink, K.
    Karolinska Inst, Stockholm, Sweden..
    Granberg, T.
    Karolinska Inst, Stockholm, Sweden..
    Precision of manual vs. automated corpus callosum atrophy measurements in multiple sclerosis2018In: Multiple Sclerosis Journal, ISSN 1352-4585, E-ISSN 1477-0970, Vol. 24, p. 209-209Article in journal (Other academic)
  • 9.
    Platten, Michael
    et al.
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Biomedical Engineering and Health Systems, Medical Imaging. Department of Clinical Neuroscience Karolinska Institutet Stockholm Sweden;Department of Neuroradiology Karolinska University Hospital Stockholm Sweden;School of chemistry, biotechnology, and health KTH Royal Institute of Technology Stockholm Sweden.
    Ouellette, Russell
    Department of Clinical Neuroscience Karolinska Institutet Stockholm Sweden;Department of Neuroradiology Karolinska University Hospital Stockholm Sweden.
    Herranz, Elena
    Division of Multiple Sclerosis Imaging Laboratory Athinoula A. Martinos Center for Biomedical Imaging and Harvard Medical School Boston Massachusetts USA.
    Barletta, Valeria
    Division of Multiple Sclerosis Imaging Laboratory Athinoula A. Martinos Center for Biomedical Imaging and Harvard Medical School Boston Massachusetts USA.
    Treaba, Constantina A.
    Division of Multiple Sclerosis Imaging Laboratory Athinoula A. Martinos Center for Biomedical Imaging and Harvard Medical School Boston Massachusetts USA.
    Mainero, Caterina
    Division of Multiple Sclerosis Imaging Laboratory Athinoula A. Martinos Center for Biomedical Imaging and Harvard Medical School Boston Massachusetts USA.
    Granberg, Tobias
    Department of Clinical Neuroscience Karolinska Institutet Stockholm Sweden;Department of Neuroradiology Karolinska University Hospital Stockholm Sweden.
    Cortical and white matter lesion topology influences focal corpus callosum atrophy in multiple sclerosis2022In: Journal of Neuroimaging, ISSN 1051-2284, E-ISSN 1552-6569Article in journal (Refereed)
  • 10.
    Plattén, Michael
    et al.
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH).
    Brusini, Irene
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Biomedical Engineering and Health Systems, Medical Imaging.
    Andersson, Olle
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH).
    Ouellette, Russell
    Piehl, Fredrik
    Wang, Chunliang
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Biomedical Engineering and Health Systems, Medical Imaging.
    Granberg, Tobias
    Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden.
    Deep Learning Corpus Callosum Segmentation as a Neurodegenerative Marker in Multiple Sclerosis.2021In: Journal of Neuroimaging, ISSN 1051-2284, E-ISSN 1552-6569, Vol. 31, no 3, p. 493-500Article in journal (Refereed)
    Abstract [en]

    BACKGROUND AND PURPOSE: Corpus callosum atrophy is a sensitive biomarker of multiple sclerosis (MS) neurodegeneration but typically requires manual 2D or volumetric 3D-based segmentations. We developed a supervised machine learning algorithm, DeepnCCA, for corpus callosum segmentation and relate callosal morphology to clinical disability using conventional MRI scans collected in clinical routine.

    METHODS: In a prospective study of 553 MS patients with 704 acquisitions, 200 unique 2D T2 -weighted MRI scans were delineated to develop, train, and validate DeepnCCA. Comparative FreeSurfer segmentations were obtained in 504 3D T1 -weighted scans. Both FreeSurfer and DeepnCCA outputs were correlated with clinical disability. Using principal component analysis of the DeepnCCA output, the morphological changes were explored in relation to clinical disease burden.

    RESULTS: .76%, for intracranial and corpus callosum area, respectively through 10-fold cross-validation). DeepnCCA had numerically stronger correlations with cognitive and physical disability as compared to FreeSurfer: Expanded disability status scale (EDSS) ±6 months (r = -.22 P = .002; r = -.17, P = .013), future EDSS (r = -.26, P<.001; r = -.17, P = .012), and future symbol digit modalities test (r = .26, P = .001; r = .24, P = .003). The corpus callosum became thinner with increasing cognitive and physical disability. Increasing physical disability, additionally, significantly correlated with a more angled corpus callosum.

    CONCLUSIONS: DeepnCCA (https://github.com/plattenmichael/DeepnCCA/) is an openly available tool that can provide fast and accurate corpus callosum measurements applicable to large MS cohorts, potentially suitable for monitoring disease progression and therapy response.

  • 11.
    Plattén, Michael
    et al.
    KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH). Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden.
    Martola, J.
    Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden.
    Fink, K.
    Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden.
    Ouellette, R.
    Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden.
    Piehl, F.
    Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden.
    Granberg, T.
    Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden.
    MRI-Based Manual versus Automated Corpus Callosum Volumetric Measurements in Multiple Sclerosis2019In: Journal of Neuroimaging, ISSN 1051-2284, E-ISSN 1552-6569Article in journal (Refereed)
    Abstract [en]

    BACKGROUND AND PURPOSE

    Corpus callosum atrophy is a neurodegenerative biomarker in multiple sclerosis (MS). Manual delineations are gold standard but subjective and labor intensive. Novel automated methods are promising but require validation. We aimed to compare the robustness of manual versus automatic corpus callosum segmentations based on FreeSurfer.

    METHODS

    Nine MS patients (6 females, age 38 ± 13 years, disease duration 7.3 ± 5.2 years) were scanned twice with repositioning using 3‐dimensional T1‐weighted magnetic resonance imaging on three scanners (two 1.5 T and one 3.0 T), that is, six scans/patient, on the same day. Normalized corpus callosum areas were measured independently by a junior doctor and neuroradiologist. The cross‐sectional and longitudinal streams of FreeSurfer were used to segment the corpus callosum volume.

    RESULTS

    Manual measurements had high intrarater (junior doctor .96 and neuroradiologist .96) and interrater agreement (.94), by intraclass correlation coefficient (P < .001). The coefficient of variation was lowest for longitudinal FreeSurfer (.96% within scanners; 2.0% between scanners) compared to cross‐sectional FreeSurfer (3.7%, P = .001; 3.8%, P = .058) and the neuroradiologist (2.3%, P = .005; 2.4%, P = .33). Longitudinal FreeSurfer was also more accurate than cross‐sectional (Dice scores 83.9 ± 7.5% vs. 78.9 ± 8.4%, P < .01 relative to manual segmentations). The corpus callosum measures correlated with physical disability (longitudinal FreeSurfer r = –.36, P < .01; neuroradiologist r = –.32, P < .01) and cognitive disability (longitudinal FreeSurfer r = .68, P < .001; neuroradiologist r = .64, P < .001).

    CONCLUSIONS

    FreeSurfer's longitudinal stream provides corpus callosum measures with better repeatability than current manual methods and with similar clinical correlations. However, due to some limitations in accuracy, caution is warranted when using FreeSurfer with clinical data.

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