We propose HyperSteiner – an efficient heuristic algorithm for computing Steiner minimal trees in the hyperbolic space. HyperSteiner extends the Euclidean Smith-Lee-Liebman algorithm, which is grounded in a divide-and-conquer approach involving the Delaunay triangulation. The central idea is rephrasing Steiner tree problems with three terminals as a system of equations in the Klein-Beltrami model. Motivated by the fact that hyperbolic geometry is well-suited for representing hierarchies, we explore applications to hierarchy discovery in data. Results show that HyperSteiner infers more realistic hierarchies than the Minimum Spanning Tree and is more scalable to large datasets than Neighbor Joining.

Hyperbolic machine learning is an emerging field aimed at representing data with a hierarchical structure. However, there is a lack of tools for evaluation and analysis of the resulting hyperbolic data representations. To this end, we propose Hyperbolic Delaunay Geometric Alignment (HyperDGA) - a similarity score for comparing datasets in a hyperbolic space. The core idea is counting the edges of the hyperbolic Delaunay graph connecting datapoints across the given sets. We provide an empirical investigation on synthetic and real-life biological data and demonstrate that HyperDGA outperforms the hyperbolic version of classical distances between sets. Furthermore, we showcase the potential of HyperDGA for evaluating latent representations inferred by a Hyperbolic Variational Auto-Encoder.

Variational auto-encoders (VAEs) are deep generative models used for unsupervised learning, however their standard version is not topology-aware in practice since the data topology may not be taken into consideration. In this paper, we propose two different approaches with the aim to preserve the topological structure between the input space and the latent representation of a VAE. Firstly, we introduce InvMap-VAE as a way to turn any dimensionality reduction technique, given an embedding it produces, into a generative model within a VAE framework providing an inverse mapping into original space. Secondly, we propose the Witness Simplicial VAE as an extension of the simplicial auto-encoder to the variational setup using a witness complex for computing the simplicial regularization, and we motivate this method theoretically using tools from algebraic topology. The Witness Simplicial VAE is independent of any dimensionality reduction technique and together with its extension, Isolandmarks Witness Simplicial VAE, preserves the persistent Betti numbers of a dataset better than a standard VAE.