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2025 (English)In: 2025 IEEE International Conference On Cluster Computing Workshops, Cluster Workshops, Institute of Electrical and Electronics Engineers (IEEE) , 2025, p. 61-66Conference paper, Published paper (Refereed)
Abstract [en]
Exascale computing revolutionizes scientific research by facilitating large-scale simulations and data analysis. As applications generate massive, heterogeneous data streams, the I/O subsystem increasingly dominates runtime, limiting scalability and time-to-solution. Emerging storage accelerators such as the Rabbit system offer a promising path forward. Rabbit provides dynamically configurable hybrid storage, combining high-bandwidth, node-local NVMe (e.g., XFS) with shared, distributed file systems (e.g., Lustre), to match diverse I/O patterns more efficiently. In this work, we evaluate Rabbit's capability to mitigate I/O bottlenecks using iPIC3D, a representative implicit Particle-in-Cell (PIC) code for exascale scientific workloads. We perform a detailed characterization of the key phases of I/O (restart, field, and moment) and identify the dominant access patterns in these phases. We then benchmark these patterns using IOR in Rabbit hybrid storage configurations, identifying the ideal performance achievable for each access pattern under node-local and distributed storage modes. We use phase-aware mapping of these patterns to Rabbit storage systems, achieving a 4.85 times improvement in I/O throughput, reducing the I/O share of runtime from 38% to 11% and delivering an end-to-end speedup of 1.45 times. These results outline the importance of hardware-software co-design and highlight Rabbit as a scalable, data-intensive storage solution.
Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE), 2025
Keywords
High performance computing, I/O optimization, Rabbit nodes, I/O accelerators, iPIC3D, IOR
National Category
Computer Sciences
Identifiers
urn:nbn:se:kth:diva-381886 (URN)10.1109/CLUSTERWorkshops65972.2025.11164212 (DOI)001704667500019 ()2-s2.0-105018082545 (Scopus ID)
Conference
2025 International Conference on Cluster Computing-CLUSTER-Annual, SEP 02-05, 2025, University of Edinburgh, Edinburgh, ENGLAND
Note
Part of ISBN 9798331512569
QC 20260525
2026-05-252026-05-252026-07-14Bibliographically approved