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Sigurdsson, J. H., Crotty, D., Holmin, S., Sullivan, J. & Persson, M. (2025). Deep-Learning-Based Iodine Map Prediction with Photon-Counting CT Images. In: Medical Imaging 2025: Physics of Medical Imaging: . Paper presented at Medical Imaging 2025: Physics of Medical Imaging, San Diego, United States of America, Feb 17 2025 - Feb 21 2025. SPIE-Intl Soc Optical Eng, Article ID 134053O.
Open this publication in new window or tab >>Deep-Learning-Based Iodine Map Prediction with Photon-Counting CT Images
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2025 (English)In: Medical Imaging 2025: Physics of Medical Imaging, SPIE-Intl Soc Optical Eng , 2025, article id 134053OConference paper, Published paper (Refereed)
Abstract [en]

Energy-resolving photon-counting CT promises improved material-separation capabilities compared to conventional CT. However, accurate separation of iodine and calcium, which is especially important for imaging atherosclerotic plaques, remains a challenge. In this proof-of-concept study, we present a deep-learning based method that takes a pair of basis images from a photon-counting CT as input and produces a map of the iodine distribution where the contamination from other materials such as calcium is minimized, and demonstrate its performance on clinical images of the carotid arteries. As training data, we used 13 pairs of image slices of the neck from a silicon-based photon-counting spectral CT, with one non-contrast and one contrast-enhanced slice in each pair. To generate a ground-truth iodine maps as training labels, 40 keV virtual monoenergetic non-contrast images were registered to align with the corresponding 40 keV contrast-enhanced images, and the difference between those two image slices was used to generate an iodine concentration map. We trained a ResUNet++ deep convolutional neural network using water-iodine basis image pairs resulting from a two-basis material decomposition as inputs and the iodine concentration map obtained from subtraction as label. The resulting method was evaluated on a previously unseen photon-counting CT image slice of the neck from the same patient. Our results show that the trained network correctly highlights the image features containing iodinated contrast agent and quantifies the concentration accurately. The contamination from calcium and other tissues is significantly reduced compared to the original iodine basis image. Our results demonstrate that the proposed method can successfully separate iodine from calcium and other tissues on clinical silicon-based photon-counting CT, with important potential implications for imaging of atherosclerosis.

Place, publisher, year, edition, pages
SPIE-Intl Soc Optical Eng, 2025
Keywords
Carotid arteries, Deep neural network, Iodine Map, Material decomposition, Photon-counting CT
National Category
Radiology and Medical Imaging Medical Imaging
Identifiers
urn:nbn:se:kth:diva-363778 (URN)10.1117/12.3047898 (DOI)001487074500113 ()2-s2.0-105004584370 (Scopus ID)
Conference
Medical Imaging 2025: Physics of Medical Imaging, San Diego, United States of America, Feb 17 2025 - Feb 21 2025
Note

Part of ISBN 9781510685888

QC 20250527

Available from: 2025-05-21 Created: 2025-05-21 Last updated: 2025-07-04Bibliographically approved
Persson, M., Eguizabal, A. & Danielsson, M. (2025). Determining a confidence indication for deep-learning image reconstruction in computed tomography. Japanese patent 7702611.
Open this publication in new window or tab >>Determining a confidence indication for deep-learning image reconstruction in computed tomography
2025 (English)Patent (Other (popular science, discussion, etc.))
Abstract [ja]

コンピュータ断層撮影(CT)における機械学習画像再構成のための1つ以上の信頼度表示を決定するための方法及びシステムが提供される。この方法は、(S1)エネルギー分解X線データを取得することと、(S2)少なくとも1つの機械学習システムに基づいてエネルギー分解X線データを処理して、少なくとも1つの再構成基底画像又はその画像特徴の事後確率分布の表現を生成することとを備える。本方法は更に、事後確率分布の表現に基づいて、前記少なくとも1つの再構成基底画像、又は前記少なくとも1つの再構成基底画像に由来する少なくとも1つの派生画像、又は前記少なくとも1つの再構成基底画像又は前記少なくとも1つの派生画像の画像特徴に対する1つ以上の信頼度表示を生成する(S3)ことを含む。【選択図】図6A

National Category
Medical Imaging
Identifiers
urn:nbn:se:kth:diva-367953 (URN)
Patent
Japanese patent 7702611 (2025-07-04)
Note

The correct spelling of the inventor's name is Eguizabal.

QC 20250820

Available from: 2025-07-31 Created: 2025-07-31 Last updated: 2025-08-20Bibliographically approved
Burton, G., Danielsson, M. & Persson, M. (2025). Feasibility of Photon-Counting Micro-CT for Intraoperative Specimen Imaging: a Simulation Study. In: Medical Imaging 2025: Physics of Medical Imaging: . Paper presented at Medical Imaging 2025: Physics of Medical Imaging, San Diego, United States of America, Feb 17 2025 - Feb 21 2025. SPIE-Intl Soc Optical Eng, Article ID 134053K.
Open this publication in new window or tab >>Feasibility of Photon-Counting Micro-CT for Intraoperative Specimen Imaging: a Simulation Study
2025 (English)In: Medical Imaging 2025: Physics of Medical Imaging, SPIE-Intl Soc Optical Eng , 2025, article id 134053KConference paper, Published paper (Refereed)
Abstract [en]

Purpose: We aim to investigate the feasibility of developing a tabletop photon-counting micro-computed tomography (CT) device that can perform intraoperative virtual histopathology on tumor specimens, showing the demarcation between the tumor and surrounding tissue. By enabling fast imaging and tissue analysis during surgery, the micro-CT device would enhance the accuracy of tumor excision and thus minimize harm to the patient by reducing the need for re-operations. Approach: A simulation using a Python package called SpekPy is used to investigate the potential capabilities of a tabletop micro-CT device on tumor specimens.1 We use existing micro-CT systems as a model for the tube parameters (filters, voltage, power, and current), and we assume an ideal detector in order to understand the upper limit of detection capabilities. Results: The simulated data indicate that when the contrast-to-noise ratio (CNR) is normalized for time, higher tube voltage is optimal across all tissue thicknesses. In contrast, when the CNR is normalized for dose, lower tube voltage ranges are preferable for thinner tissues. Since shorter acquisition times are desirable in this application and dose is not a concern (as the tissue is not live), it is useful to know that the highest applied voltage will yield the highest CNR, and thus the best capability for tumor differentiation. Additionally, the data suggest that the device can distinguish features as small as 33 microns within soft tissue, facilitating precise assessment of tumor margins. Conclusions: The simulation demonstrates that a micro-CT device with these specifications is capable of effectively performing intraoperative tumor margin assessment.

Place, publisher, year, edition, pages
SPIE-Intl Soc Optical Eng, 2025
Keywords
contrast-to-noise ratio, intraoperative imaging, Photon-counting micro-CT, soft tissue imaging, tumor margin assessment
National Category
Radiology and Medical Imaging Atom and Molecular Physics and Optics Medical Imaging Cancer and Oncology
Identifiers
urn:nbn:se:kth:diva-363750 (URN)10.1117/12.3047899 (DOI)001487074500109 ()2-s2.0-105004576752 (Scopus ID)
Conference
Medical Imaging 2025: Physics of Medical Imaging, San Diego, United States of America, Feb 17 2025 - Feb 21 2025
Note

 Part of ISBN 978151068588

QC 20250528

Available from: 2025-05-21 Created: 2025-05-21 Last updated: 2025-08-01Bibliographically approved
Brunskog, R., Persson, M. & Danielsson, M. (2025). First experimental demonstration of charge-cloud imaging for micrometer-scale resolution with a photon-counting silicon CT detector. In: Medical Imaging 2025: Physics of Medical Imaging: . Paper presented at Medical Imaging 2025: Physics of Medical Imaging, San Diego, United States of America, Feb 17 2025 - Feb 21 2025. SPIE-Intl Soc Optical Eng, Article ID 134050B.
Open this publication in new window or tab >>First experimental demonstration of charge-cloud imaging for micrometer-scale resolution with a photon-counting silicon CT detector
2025 (English)In: Medical Imaging 2025: Physics of Medical Imaging, SPIE-Intl Soc Optical Eng , 2025, article id 134050BConference paper, Published paper (Refereed)
Abstract [en]

Purpose: Evaluation of a new sensor for micrometer-resolution photon-counting CT. Approach: DAC-sweeps are performed using a commercial x-ray tube and are compared to simulations. An edge-scan using a 250 µm tungsten wafer without any interaction logic is also performed, as well as single interaction readout of the energy spectrum that is compared to simulations. Results: The edge-scan shows a line spread function with a full width at half maximum of 11.6 µm and a 5% modulation transfer function at 850 lp/cm. Conclusions: Fair agreement with simulations indicated that employing the interaction can further significantly improve spatial resolution.

Place, publisher, year, edition, pages
SPIE-Intl Soc Optical Eng, 2025
Keywords
computed tomography, deep silicon, photon-counting, ultra-high resolution
National Category
Radiology and Medical Imaging Medical Imaging Other Physics Topics Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:kth:diva-363752 (URN)10.1117/12.3048609 (DOI)001487074500010 ()2-s2.0-105004574052 (Scopus ID)
Conference
Medical Imaging 2025: Physics of Medical Imaging, San Diego, United States of America, Feb 17 2025 - Feb 21 2025
Note

Part of ISBN   9781510685888

QC 20250528

Available from: 2025-05-21 Created: 2025-05-21 Last updated: 2025-07-04Bibliographically approved
Sundberg, C., Bergentoft, F., Persson, M. & Danielsson, M. (2025). Methods and systems for coincidence detection in x-ray detectors. Japanese patent 7625687.
Open this publication in new window or tab >>Methods and systems for coincidence detection in x-ray detectors
2025 (English)Patent (Other (popular science, discussion, etc.))
Abstract [ja]

【課題】改良されたX線検出器システムを提供する。【解決手段】X線源からのX線放射を検出するフォトンカウンティングX線検出器(20)、及び前記X線検出器における光子相互作用の時間に関する情報と、前記X線検出器に対する前記X線源の位置に関する情報とに基づいて、前記X線検出器に入射する放射線に関する情報を決定する及び/又は取得する同時計数検出システム(60)を含むX線検出器システム(5)を提供する。このようなX線検出器システムを含むX線イメージングシステム、並びに対応する同時計数検出システム及び対応する方法も提供する。【選択図】図2B

National Category
Medical Imaging
Identifiers
urn:nbn:se:kth:diva-367951 (URN)
Patent
Japanese patent 7625687 (2025-02-03)
Note

Japanese patent  JP7625687B2

QC 20250820

Available from: 2025-07-31 Created: 2025-07-31 Last updated: 2025-08-20Bibliographically approved
Eguizabal, A., Grönberg, F. & Persson, M. (2025). Methods and Systems Related to X-ray Imaging. Japanese patent 7631505B2.
Open this publication in new window or tab >>Methods and Systems Related to X-ray Imaging
2025 (English)Patent (Other (popular science, discussion, etc.))
Abstract [en]

There is provided a method and corresponding system for image reconstruction based on energy-resolved x-ray data. The method comprises collecting (S1) at least one representation of energy-resolved x-ray data, and performing (S2) at least two basis material decompositions based on said at least one representation of energy-resolved x-ray data to generate at least two original basis image representation sets. The method further comprises obtaining or selecting (S3) at least two basis image representations from at least two of said original basis image representation sets, and processing (S4) said obtained or selected basis image representations by data processing based on machine learning to generate at least one representation of output image data.

National Category
Medical Imaging
Identifiers
urn:nbn:se:kth:diva-367952 (URN)
Patent
Japanese patent 7631505B2 (2025-02-18)
Note

The correct spelling of the inventor's name is "Eguizabal"

QC 20250813

Available from: 2025-07-31 Created: 2025-07-31 Last updated: 2025-08-13Bibliographically approved
Hein, D., Holmin, S., Prochazka, V., Yin, Z., Danielsson, M., Persson, M. & Wang, G. (2025). Syn2Real: synthesis of CT image ring artifacts for deep learning-based correction. Physics in Medicine and Biology, 70(4), Article ID 04NT01.
Open this publication in new window or tab >>Syn2Real: synthesis of CT image ring artifacts for deep learning-based correction
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2025 (English)In: Physics in Medicine and Biology, ISSN 0031-9155, E-ISSN 1361-6560, Vol. 70, no 4, article id 04NT01Article in journal (Refereed) Published
Abstract [en]

Objective. We strive to overcome the challenges posed by ring artifacts in x-ray computed tomography (CT) by developing a novel approach for generating training data for deep learning-based methods. Training such networks require large, high quality, datasets that are often generated in the data domain, time-consuming and expensive. Our objective is to develop a technique for synthesizing realistic ring artifacts directly in the image domain, enabling scalable production of training data without relying on specific imaging system physics. Approach. We develop 'Syn2Real,' a computationally efficient pipeline that generates realistic ring artifacts directly in the image domain. To demonstrate the effectiveness of our approach, we train two versions of UNet, vanilla and a high capacity version with self-attention layers that we call UNetpp, with & ell;2 and perceptual losses, as well as a diffusion model, on energy-integrating CT images with and without these synthetic ring artifacts. Main Results. Despite being trained on conventional single-energy CT images, our models effectively correct ring artifacts across various monoenergetic images, at different energy levels and slice thicknesses, from a prototype photon-counting CT system. This generalizability validates the realism and versatility of our ring artifact generation process. Significance. Ring artifacts in x-ray CT pose a unique challenge to image quality and clinical utility. By focusing on data generation, our work provides a foundation for developing more robust and adaptable ring artifact correction methods for pre-clinical, clinical and other CT applications.

Place, publisher, year, edition, pages
IOP Publishing, 2025
Keywords
deep learning, CT, photon-counting CT, ring artifacts, data synthesis, UNet
National Category
Radiology and Medical Imaging Medical Imaging Computer graphics and computer vision
Identifiers
urn:nbn:se:kth:diva-360399 (URN)10.1088/1361-6560/adad2c (DOI)001415391700001 ()39842097 (PubMedID)2-s2.0-85218222563 (Scopus ID)
Note

QC 20250226

Available from: 2025-02-26 Created: 2025-02-26 Last updated: 2025-05-08Bibliographically approved
Larsson, K., Hein, D., Huang, R., Collin, D., Scotti, A., Fredenberg, E., . . . Persson, M. (2024). Deep learning estimation of proton stopping power with photon-counting computed tomography: a virtual study. Journal of Medical Imaging, 11, Article ID S12809.
Open this publication in new window or tab >>Deep learning estimation of proton stopping power with photon-counting computed tomography: a virtual study
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2024 (English)In: Journal of Medical Imaging, ISSN 2329-4302, E-ISSN 2329-4310, Vol. 11, article id S12809Article in journal (Refereed) Published
Abstract [en]

Purpose: Proton radiation therapy may achieve precise dose delivery to the tumor while sparing non-cancerous surrounding tissue, owing to the distinct Bragg peaks of protons. Aligning the high-dose region with the tumor requires accurate estimates of the proton stopping power ratio (SPR) of patient tissues, commonly derived from computed tomography (CT) image data. Photon-counting detectors for CT have demonstrated advantages over their energy-integrating counterparts, such as improved quantitative imaging, higher spatial resolution, and filtering of electronic noise. We assessed the potential of photon-counting computed tomography (PCCT) for improving SPR estimation by training a deep neural network on a domain transform from PCCT images to SPR maps. Approach: The XCAT phantom was used to simulate PCCT images of the head with CatSim, as well as to compute corresponding ground truth SPR maps. The tube current was set to 260 mA, tube voltage to 120 kV, and number of view angles to 4000. The CT images and SPR maps were used as input and labels for training a U-Net. Results: Prediction of SPR with the network yielded average root mean square errors (RMSE) of 0.26% to 0.41%, which was an improvement on the RMSE for methods based on physical modeling developed for single-energy CT at 0.40% to 1.30% and dual-energy CT at 0.41% to 3.00%, performed on the simulated PCCT data. Conclusions: These early results show promise for using a combination of PCCT and deep learning for estimating SPR, which in extension demonstrates potential for reducing the beam range uncertainty in proton therapy.

Keywords
deep learning, photon-counting computed tomography, proton stopping power, proton therapy
National Category
Radiology, Nuclear Medicine and Medical Imaging Medical Imaging
Identifiers
urn:nbn:se:kth:diva-358410 (URN)10.1117/1.JMI.11.S1.S12809 (DOI)001386330400005 ()2-s2.0-85214080434 (Scopus ID)
Note

QC 20250122

Available from: 2025-01-15 Created: 2025-01-15 Last updated: 2025-01-22Bibliographically approved
Huang, R., Larsson, K. & Persson, M. (2024). Deep-learning-based motion artifact reduction for photon-counting spectral cardiac CT. In: Medical Imaging 2024: Physics of Medical Imaging: . Paper presented at Medical Imaging 2024: Physics of Medical Imaging, San Diego, United States of America, Feb 19 2024 - Feb 22 2024. SPIE-Intl Soc Optical Eng, 12925, Article ID 1292507.
Open this publication in new window or tab >>Deep-learning-based motion artifact reduction for photon-counting spectral cardiac CT
2024 (English)In: Medical Imaging 2024: Physics of Medical Imaging, SPIE-Intl Soc Optical Eng , 2024, Vol. 12925, article id 1292507Conference paper, Published paper (Refereed)
Abstract [en]

Motion artifacts are among the most important factors degrading the diagnostic performance of x-ray CT images, in particular for photon-counting CT where these artifacts can degrade the higher spatial resolution and quantitative imaging capabilities. The purpose of this simulation study is to evaluate the capability of deep neural networks to correct for motion artifacts in spectral photon-counting cardiac CT, by generating motion-corrected virtual monoenergetic images at a range of different keVs. We used CatSim to generate synthetic training data by simulating motion-corrupted and motion-free CT imaging (100 kVp, 1 s rotation) of the dynamic XCAT phantom including heart and respiratory motion. In total 2160 image pairs were generated. We trained two different neural networks for the task of estimating motion-artifact-reduced images from motion-corrupted images: one based on UNet and one based on a Wasserstein generative adversarial network with a gradient penalty (WGAN-GP). To make these networks applicable to virtual monoenergetic images at different energies, we trained them with 40 keV and 70 keV monoenergetic images as inputs and used a loss function with two terms: 1) L1 -loss on soft tissue and bone basis images and 2) perceptual loss on 70 keV monoenergetic images. Our results show that the motion artifacts from 40 keV to 100 keV are reduced substantially. In conclusion, these results demonstrate the potential of image-domain deep neural networks to correct for motion artifacts in spectral cardiac CT images.

Place, publisher, year, edition, pages
SPIE-Intl Soc Optical Eng, 2024
Series
Progress in Biomedical Optics and Imaging - Proceedings of SPIE, ISSN 1605-7422 ; 12925
Keywords
deep learning, Motion artifact, photon-counting CT
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:kth:diva-347138 (URN)10.1117/12.3006362 (DOI)001223517100006 ()2-s2.0-85193459965 (Scopus ID)
Conference
Medical Imaging 2024: Physics of Medical Imaging, San Diego, United States of America, Feb 19 2024 - Feb 22 2024
Note

QC 20240605

Part of ISBN 978-151067154-6

Available from: 2024-06-03 Created: 2024-06-03 Last updated: 2024-06-14Bibliographically approved
Brunskog, R., Persson, M., Jin, Z. & Danielsson, M. (2024). Experimental Evaluation of a Micron-Resolution CT Detector. In: Medical Imaging 2024: Physics of Medical Imaging: . Paper presented at Medical Imaging 2024: Physics of Medical Imaging, San Diego, United States of America, Feb 19 2024 - Feb 22 2024. SPIE-Intl Soc Optical Eng, 12925, Article ID 129250B.
Open this publication in new window or tab >>Experimental Evaluation of a Micron-Resolution CT Detector
2024 (English)In: Medical Imaging 2024: Physics of Medical Imaging, SPIE-Intl Soc Optical Eng , 2024, Vol. 12925, article id 129250BConference paper, Published paper (Refereed)
Abstract [en]

Purpose: Current photon-counting detectors are limited to a pixel size of 0.3 mm-1 mm, as decreasing the pixel size further generally introduces degraded dose efficiency and energy resolution from excessive charge sharing. In this work, we present experimental measurements of the first photon-counting detector prototype designed to leverage the charge sharing to estimate the photon interaction position, where simulations indicate a theoretical resolution of around 1 µm using a similar geometry. The goal of the measurements is to validate our Monte-Carlo simulation for further development. Approach: DAC sweeps are performed with an X-ray beam at specified locations on the sensor front, with the beam at 20 keV and 35 keV, as well as with different sensor biases with the beam at 35 keV. The experimental data are then compared to a Monte Carlo simulation combined with a charge transport model. In this first prototype wire bonds are used, and as such only a few channels are connected. Results: The experimental data agree generally well with the simulated data with the beam close to the electrodes, with the simulated data diverging from the experiments with the beam further away from the electrodes. The induced charge cloud signal exhibits a fairly linear dependency on the beam position, indicating that any estimation techniques will yield more precise position when the photon interacts further away from the electrodes, rather than closer. Conclusions: With the experimental data and the simulations agreeing generally well, together with the same software previously indicating a resolution of around 1 µm, we expect an ultra-high-resolution detector to be in reach, and are encouraged to continue development.

Place, publisher, year, edition, pages
SPIE-Intl Soc Optical Eng, 2024
Series
Progress in Biomedical Optics and Imaging - Proceedings of SPIE, ISSN 1605-7422 ; 12925
National Category
Physical Sciences
Identifiers
urn:nbn:se:kth:diva-347132 (URN)10.1117/12.2692858 (DOI)001223517100008 ()2-s2.0-85193488296 (Scopus ID)
Conference
Medical Imaging 2024: Physics of Medical Imaging, San Diego, United States of America, Feb 19 2024 - Feb 22 2024
Note

QC 20240605

Part of ISBN 978-151067154-6

Available from: 2024-06-03 Created: 2024-06-03 Last updated: 2024-06-14Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0002-5092-8822

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