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Publications (6 of 6) Show all publications
Svanberg Frisinger, M. S., Mimiroglu, D., Ullah, L., Verma, S., Martinelle, M., Berglund, P. & Hedin, N. (2025). Accelerated Uptake of CO2 Catalyzed by Immobilized Thermophilic Carbonic Anhydrase on Dispersed Aminated Mesoporous Silica. ACS Applied Materials and Interfaces, 17(45), 61919-61928
Open this publication in new window or tab >>Accelerated Uptake of CO2 Catalyzed by Immobilized Thermophilic Carbonic Anhydrase on Dispersed Aminated Mesoporous Silica
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2025 (English)In: ACS Applied Materials and Interfaces, ISSN 1944-8244, E-ISSN 1944-8252, Vol. 17, no 45, p. 61919-61928Article in journal (Refereed) Published
Abstract [en]

Efficient and durable biocatalysts are important for sustainable CO2capture technologies, but enzyme stability often limits their use under harsh process conditions. Here, we evaluate carbonic anhydrases (CAs) adsorbed onto aminated mesoporous SBA-15 as biocatalysts for CO2capture under the hypothesis of adsorption-induced thermal stabilization. Carbonic anhydrase from the thermophilic bacterium Persephonella marina (pmCA) and commercial bovine erythrocyte carbonic anhydrase (bCA) were used. Enzyme adsorption isotherms for pmCA and bCA onto the aminated SBA-15 were established, along with desorption tests. Adsorbed and free pmCA and bCA were incubated at 40–90 °C for 14 d. The structural integrity and possibility of amine leaching of the incubated (90°, 14 d) aminated SBA-15 were analyzed by X-ray diffraction (XRD) and NMR spectroscopy. The reaction product speciation in CO2-loaded catalyzed and uncatalyzed dispersions was monitored using infrared (IR) spectroscopy. The maximum enzyme adsorption capacities were established to be 1.4 ± 0.2 g pmCA·g-aminated SBA-15–1and 2.1 ± 0.5 g bCA·g-aminated SBA-15–1, with no detectable desorption. Adsorbed pmCA and bCA maintained high activity for 14 d at 40–65 °C and for 4 d at 90 °C, whereas free enzymes lost activity within 4 d at all temperatures. The XRD patterns of the heat-treated (90 °C, 14 d) aminated SBA-15 indicated a full collapse of the mesostructure. IR spectroscopy confirmed enhanced HCO3–formation in the presence of immobilized CA. Overall, enzyme adsorption onto the aminated SBA-15 significantly improved the thermal stability and activity of pmCA and bCA compared to the free enzymes, demonstrating the potential of adsorbed CAs for biocatalysis.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2025
Keywords
aminated silica, Biocatalysis, CO2capture, enzyme immobilization
National Category
Materials Chemistry Molecular Biology Physical Chemistry
Identifiers
urn:nbn:se:kth:diva-373507 (URN)10.1021/acsami.5c08889 (DOI)001605661000001 ()41152143 (PubMedID)2-s2.0-105021663720 (Scopus ID)
Note

QC 20251204

Available from: 2025-12-04 Created: 2025-12-04 Last updated: 2025-12-04Bibliographically approved
Althobiti, M., Nhung, T. T., Verma, S., Albugami, R. R. & Kumar, R. (2025). Artificial intelligence and biosensors: Transforming cancer diagnostics. Medicine in Novel Technology and Devices, 27, Article ID 100378.
Open this publication in new window or tab >>Artificial intelligence and biosensors: Transforming cancer diagnostics
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2025 (English)In: Medicine in Novel Technology and Devices, E-ISSN 2590-0935, Vol. 27, article id 100378Article, review/survey (Refereed) Published
Abstract [en]

Cancer is one of the leading causes of death worldwide. Early detection of cancer can play a decisive role in cancer treatment and improving survival rates. Conventional cancer detection methods, such as biopsy, imaging and blood tests are generally invasive and time-consuming, and their results have accuracy issues. Biosensors with artificial intelligence integration play a significant and evolving role in cancer diagnostics, offering non-invasive, rapid, and highly sensitive methods for early detection, monitoring, and treatment of cancer. Biosensors detect specific biomarkers associated with cancerous cells or tumours, such as nucleic acid (DNA, RNA), small molecules, peptides, proteins and metabolites. In recent years, many predictive artificial intelligence models and bioinformatics tools have been developed to integrate biosensors, emerging as powerful tools for cancer diagnostics. This review explores the role of biosensors in cancer detection, the development and application of predictive AI models and bioinformatics tools in cancer detection through biosensor technologies, and the challenges associated with their clinical adoption.

Place, publisher, year, edition, pages
Elsevier BV, 2025
Keywords
Artificial intelligence, Biomarker and machine learning, Biosensors, Cancer diagnostics
National Category
Cancer and Oncology
Identifiers
urn:nbn:se:kth:diva-368692 (URN)10.1016/j.medntd.2025.100378 (DOI)001517631200001 ()2-s2.0-105008513805 (Scopus ID)
Note

QC 20250821

Available from: 2025-08-21 Created: 2025-08-21 Last updated: 2025-09-26Bibliographically approved
Thi Trang Nhung, T., Verma, S., Ponne, S., Meghwanshi, G. K., Schön, T. & Kumar, R. (2025). Bacteriophage-based strategies for biocontrol and treatment of infectious diseases. Computational and Structural Biotechnology Journal, 27, 2924-2932
Open this publication in new window or tab >>Bacteriophage-based strategies for biocontrol and treatment of infectious diseases
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2025 (English)In: Computational and Structural Biotechnology Journal, E-ISSN 2001-0370, Vol. 27, p. 2924-2932Article, review/survey (Refereed) Published
Abstract [en]

Bacteriophages are viruses that infect bacteria, which are essential for controlling bacterial diversity. Among the novel aspects, phage display-based strategies are used for epitope mapping and the development of immunotherapy. A recent classification system has been developed based on the recent sequencing methods and bioinformatic tools. The unique specificity of phages is of increasing use in biocontrol, where bacteriophages are applied to target and reduce harmful bacterial populations in agriculture, food preservation and safety, offering a sustainable alternative to chemical exposure and a plausible solution to excessive misuse of antibiotics. Phage therapy has emerged as a complement to antibiotics for difficult-to-treat infectious diseases such as multi-drug resistant bacteria where other alternatives are lacking. The ability of bacteriophages to specifically target pathogenic bacteria while sparing the normal flora makes them attractive treatment options. Among the challenges are the slow uptake of phage therapy in the clinical setting, a lack of standardisation and regulatory issues. Nevertheless, phage-based strategies are likely to become a future cornerstone for biocontrol and treatment of infectious diseases.

Place, publisher, year, edition, pages
Elsevier BV, 2025
Keywords
Antimicrobial resistance, Bacteriophage, Biocontrol, Phage therapy and antibiotic
National Category
Microbiology
Identifiers
urn:nbn:se:kth:diva-368896 (URN)10.1016/j.csbj.2025.06.046 (DOI)001527996600001 ()40677245 (PubMedID)2-s2.0-105009722154 (Scopus ID)
Note

QC 20250822

Available from: 2025-08-22 Created: 2025-08-22 Last updated: 2025-11-13Bibliographically approved
Nhung, T. T., Khan, N. & Verma, S. (2025). Current scientific perspectives on probiotics and gut health. International Journal of Nutrology, 18(2), Article ID e25212.
Open this publication in new window or tab >>Current scientific perspectives on probiotics and gut health
2025 (English)In: International Journal of Nutrology, ISSN 1984-3011, Vol. 18, no 2, article id e25212Article, review/survey (Refereed) Published
Abstract [en]

Probiotics are live microorganisms that have gained significant attention due to their potential to improve human health. Nowadays, probiotics are widely used to prevent and treat gastrointestinal disorders, such as irritable bowel syndrome, diarrhea, and inflammatory bowel disease. In the past few years, probiotics have been explored for their role in immune modulation, mental health, and skin conditions. Probiotic strains from the bacterial genus Lactobacillus, Bifidobacterium, and yeast Saccharomyces boulardii have demonstrated positive effects on gut microbiota composition as well as overall health. Advances in machine learning models based on next-generation genomic sequencing information and microbiome research are unveiling new probiotic strains and supporting further development of personalized probiotic therapies tailored to individual microbiomes. In spite of their promising health benefits, many challenges still remain, including strain-specific variability, regulatory hurdles, and long-term safety and efficacy concerns. This review article covers the overall current market scenario, probiotic research and development, and new bioinformatics approaches in the discovery of new probiotic strain identification for health benefits.

Place, publisher, year, edition, pages
Zotarelli-Filho Scientific Works, 2025
Keywords
Bifidobacterium, Digestion, Health Benefits, Lactobacillus, Probiotic
National Category
Microbiology Nutrition and Dietetics
Identifiers
urn:nbn:se:kth:diva-368512 (URN)10.54448/IJN25212 (DOI)2-s2.0-105007970504 (Scopus ID)
Note

QC 20250818

Available from: 2025-08-18 Created: 2025-08-18 Last updated: 2025-08-18Bibliographically approved
Lalchhuanawmi, S., Kumar Malik, C., Kumar, R., Verma, S., Garg, P. & Singh, S. (2025). Leishmania donovani homoserine dehydrogenase: Biochemical and structural characterization of a novel parasite specific enzyme of aspartate pathway. Gene, 947, Article ID 149335.
Open this publication in new window or tab >>Leishmania donovani homoserine dehydrogenase: Biochemical and structural characterization of a novel parasite specific enzyme of aspartate pathway
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2025 (English)In: Gene, ISSN 0378-1119, E-ISSN 1879-0038, Vol. 947, article id 149335Article in journal (Refereed) Published
Abstract [en]

Visceral leishmaniasis is a neglected tropical disease. Drug resistance and toxicity are the critical issues with the currently available antileishmanial drugs. Therefore, research efforts are underway to identify and validate new drug targets specific to Leishmania parasite. The enzyme homoserine dehydrogenase (HSD) functions in the third step of aspartate pathway. The present study focuses on the biophysical and biochemical characterization of HSD enzyme from Leishmania donovani (LdHSD) which is unique to the parasite with no homologous enzyme in the host. LdHSD gene was cloned in pET28c(+) vector and transformed in E. coli BL21 (DE3) strain. LdHSD recombinant enzyme of molecular weight 46.6 kDa with 6X-His tag at the C-terminal end was expressed, purified by nickel affinity chromatography and confirmed by western blot analysis using anti-His antibody. Effect of pH, temperature, salts, metal ions and amino acids on the recombinant enzyme were evaluated. Kinetic parameters of LdHSD were evaluated for substrates L-homoserine and NADP+. Biophysical analysis revealed that the enzyme is rich in β-sheets. Thermal denaturation study revealed that the protein is stable up to 45 °C. Furthermore, comprehensive comparative sequence analysis and structural modeling revealed the structural and functionally important residues, which are involved in the catalytic mechanisms. The putative binding mode of the natural substrate L-homoserine into the active site of LdHSD was also elucidated. These findings provide a foundation for the development of selective, target-based inhibitors against the HSD enzyme of the parasite.

Place, publisher, year, edition, pages
Elsevier BV, 2025
Keywords
Aspartate pathway, Homoserine, Homoserine dehydrogenase, Kinetics, Visceral Leishmaniasis
National Category
Molecular Biology Structural Biology
Identifiers
urn:nbn:se:kth:diva-360590 (URN)10.1016/j.gene.2025.149335 (DOI)001430878300001 ()39961538 (PubMedID)2-s2.0-85218127405 (Scopus ID)
Note

QC 20250311

Available from: 2025-02-26 Created: 2025-02-26 Last updated: 2025-05-27Bibliographically approved
Meghwanshi, G. K., Verma, S., Srivastava, V. & Kumar, R. (2022). Archaeal lipolytic enzymes: Current developments and further prospects. Biotechnology Advances, 61, Article ID 108054.
Open this publication in new window or tab >>Archaeal lipolytic enzymes: Current developments and further prospects
2022 (English)In: Biotechnology Advances, ISSN 0734-9750, E-ISSN 1873-1899, Vol. 61, article id 108054Article, review/survey (Refereed) Published
Abstract [en]

Lipolytic enzymes include triacylglycerol lipases (EC 3.1.1.3) and esterases (EC 3.1.1.1) that catalyze the cleavage and formation of ester bonds. They are potential industrial biocatalysts because of their broad range of activities on natural and synthetic substrates, high stability in organic solvents, thermal stability, stability in highly acidic and alkaline pH conditions and enantio-, regio-and chemo-selectivity. They also have varied ap-plications in different sectors, among which industrial biotechnology, the production of cleaning agents, and pharmaceuticals are the most important ones. Identifying extremophilic lipolytic enzymes is of paramount in-terest and is a growing field in academic and industrial research. This review is focused on the current knowledge and future avenues of investigation on lipolytic enzymes sourced from the underexploited archaeal domain. Archaea is a potential source for novel extremophilic enzymes, which have high demand in the industries. The archaeal lipases and esterases are clustered into different families based on their similarity/dissimilarity at the genetic level and protein structures. The updated information on characterized and putative lipase sequences has also been presented in this paper. Common structural scaffolds of archaeal lipases have been deduced and dis-cussed in this review. However, huge diversity at the level of their genetic sequences has yet to be correlated with the structure-function relationship. Based on their biochemical properties, possible applications and future prospective of archaeal lipolytic enzymes have also been proposed.

Place, publisher, year, edition, pages
Elsevier BV, 2022
Keywords
Archaea, Lipolytic, Esterase, Lipase, Extremophilic and Alkaliphilic enzymes
National Category
Biocatalysis and Enzyme Technology
Identifiers
urn:nbn:se:kth:diva-322167 (URN)10.1016/j.biotechadv.2022.108054 (DOI)000881810600001 ()36307049 (PubMedID)2-s2.0-85140803980 (Scopus ID)
Note

QC 20221205

Available from: 2022-12-05 Created: 2022-12-05 Last updated: 2022-12-05Bibliographically approved
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ORCID iD: ORCID iD iconorcid.org/0000-0003-4938-8352

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