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Functionalization of spider silk with affinity and bioactive domains via genetic engineering for in vitro disease diagnosis and tissue engineering
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH).
2018 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

In the recent past, spider silk has drawn significant attention from researchers mainly due to its distinguished mechanical strength, elasticity, biocompatibility and biodegradability. Technological advancements in genetic engineering have resulted in methods for creation of partial spider silk proteins. The main objective of this thesis has been to functionalize a partial spider silk protein, 4RepCT, with different affinity and bioactive domains via genetic engineering. Furthermore, the applicability of materials based on functionalized/bioactivated partial spider silk proteins for in vitro disease diagnosis and tissue engineering applications has been investigated.

In Paper I, four affinity domains of different sizes and folds were genetically attached to 4RepCT. All four silk fusion proteins could self-assemble to silk-like fibers. The retained ability of each added affinity domain to bind its respective target while in silk format was also verified. A construct where a monomeric streptavidin domain was genetically fused to 4RepCT was used to allow non-covalent presentation of biotinylated growth factors. Such materials have potential for applications where capture of growth factors could be advantageous, for example in vitro cell culture studies.

In Paper II, as a proof-of-concept, two recombinant antibody fragments (scFvs), previously shown to contribute to the candidate protein signature for diagnosing Systemic Lupus Erythematosus (SLE), were covalently attached to either ends of two types of partial spider silk proteins, 4RepCT and NTCT. All of the generated silk fusion proteins were shown able to self-assemble into fibres as well as defined spots in an array. Significantly higher target detection signal was reported from scFv-silk fusion proteins when compared to the same added amount of scFvs alone in micro- and nanoarrays. Thus, scFv-silk fusion proteins can be used as capture probes in the generation of sensitive diagnostic immunoassays for effective disease diagnosis.

In Paper III, bioactivation of 4RepCT with a pleiotropic growth factor, basic fibroblast growth factor (bFGF) was investigated. The generated silk-bFGF fusion protein retained the propensity to self-assemble into surface coatings and silk-like fibers. Maintained functionality of the silk-bFGF coating to bind FGFR receptor was confirmed using surface plasmon resonance studies. Moreover, with the aim to create an artificial ECM, silk-bFGF protein was combined with FN-silk, an engineered spider silk protein previously reported to support cell adhesion. Retained bioactivity of the bFGF was confirmed by culture of primary human endothelial cells on combined silk coatings and within combined silk fibers, even when cultured in medium containing low serum and no supplemented soluble growth factors. These findings highlight the use of combined silk coatings for in vitro cell culture, and combined silk fibers as a potential scaffold for tissue engineering applications.

In Paper IV, the possibility to genetically fuse two affibody-based VEGFR2 binders, Zdimer and Ztetramer, to 4RepCT was investigated. Maintained activity of added engineered affibodies was confirmed by receptor phosphorylation and cell proliferation studies. Furthermore, the possibility to create vessel-like structures within a FN-silk based cell scaffold containing Ztetramer-silk fibrils was reported. These findings highlight the future potential of herein developed silk based cell scaffolds in regenerative medicine.

Place, publisher, year, edition, pages
KTH Royal Institute of Technology, 2018. , p. 70
Series
TRITA-CBH-FOU ; 2018:48
Keywords [en]
affinity domains, artificial ECM, basic fibroblast growth factor, functionalization, mammalian cell culture, micro-and nano arrays, partial spider silk, single chain variable fragments
National Category
Medical and Health Sciences
Research subject
Biotechnology
Identifiers
URN: urn:nbn:se:kth:diva-235698ISBN: 978-91-7729-970-7 (print)OAI: oai:DiVA.org:kth-235698DiVA, id: diva2:1252770
Public defence
2018-10-31, Oskar Kleins Auditorium, Roslagstullsbacken 21, AlbaNova University Center, Stockholm, 10:15 (English)
Opponent
Supervisors
Note

QC 20181003

Available from: 2018-10-03 Created: 2018-10-02 Last updated: 2022-06-26Bibliographically approved
List of papers
1. Recombinant Spider Silk Genetically Functionalized with Affinity Domains
Open this publication in new window or tab >>Recombinant Spider Silk Genetically Functionalized with Affinity Domains
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2014 (English)In: Biomacromolecules, ISSN 1525-7797, E-ISSN 1526-4602, Vol. 15, no 5, p. 1696-1706Article in journal (Refereed) Published
Abstract [en]

Functionalization of biocompatible materials for presentation of active protein domains is an area of growing interest. Herein, we describe a strategy for functionalization of recombinant spider silk via gene fusion to affinity domains of broad biotechnological use. Four affinity domains of different origin and structure; the IgG-binding domains Z and C2, the albumin-binding domain ABD, and the biotin-binding domain M4, were all successfully produced as soluble silk fusion proteins under nondenaturing purification conditions. Silk films and fibers produced from the fusion proteins were demonstrated to be chemically and thermally stable. Still, the bioactive domains are concluded to be folded and accessible, since their respective targets could be selectively captured from complex samples, including rabbit serum and human plasma. Interestingly, materials produced from mixtures of two different silk fusion proteins displayed combined binding properties, suggesting that tailor-made materials with desired stoichiometry and surface distributions of several binding domains can be produced. Further, use of the IgG binding ability as a general mean for presentation of desired biomolecules could be demonstrated for a human vascular endothelial growth factor (hVEGF) model system, via a first capture of anti-VEGF IgG to silk containing the Z-domain, followed by incubation with hVEGF. Taken together, this study demonstrates the potential of recombinant silk, genetically functionalized with affinity domains, for construction of biomaterials capable of presentation of almost any desired biomolecule.

Keywords
Streptococcal Protein-G, Binding-Proteins, Fusion Proteins, Serum-Albumin, Fibroin, Cell, Fibers, Biomaterials, Antibody, Bundle
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:kth:diva-146554 (URN)10.1021/bm500114e (DOI)000335939800016 ()24678858 (PubMedID)2-s2.0-84900422237 (Scopus ID)
Funder
Swedish Research CouncilVinnova
Note

QC 20140612

Available from: 2014-06-12 Created: 2014-06-12 Last updated: 2025-02-20Bibliographically approved
2. Genetic fusion of single-chain variable fragments to partial spider silk improves target detection in micro- and nanoarrays
Open this publication in new window or tab >>Genetic fusion of single-chain variable fragments to partial spider silk improves target detection in micro- and nanoarrays
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2016 (English)In: Biotechnology Journal, ISSN 1860-6768, E-ISSN 1860-7314, Vol. 11, no 3, p. 437-448Article in journal (Refereed) Published
Abstract [en]

Immobilizing biomolecules with retained functionality and stability on solid supports is crucial for generation of sensitive immunoassays. However, upon use of conventional immobilization strategies, a major portion of the biomolecules (e.g. antibodies) frequently tends to lose their bioactivity. In this study, we describe a procedure to immobilize human single-chain variable fragment (scFv) via genetic fusion to partial spider silk, which have a high tendency to adhere to solid supports. Two scFvs, directed towards serum proteins, were genetically fused to partial spider silk proteins and expressed as silk fusion proteins in E. coli. Antigen binding ability of scFvs attached to a partial silk protein denoted RC was investigated using microarray analysis, whereas scFvs fused to the NC silk variant were examined using nanoarrays. Results from micro- and nanoarrays confirmed the functionality of scFvs attached to both RC and NC silk, and also for binding of targets in crude serum. Furthermore, the same amount of added scFv gives higher signal intensity when immobilized via partial spider silk compared to when immobilized alone. Together, the results suggest that usage of scFv-silk fusion proteins in immunoassays could improve target detection, in the long run enabling novel biomarkers to be detected in crude serum proteomes.

Place, publisher, year, edition, pages
Wiley-VCH Verlagsgesellschaft, 2016
Keywords
Antigen detection, Microarray, Nanoarray, Single-chain variable fragment, Spider silk
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:kth:diva-185068 (URN)10.1002/biot.201500297 (DOI)000372141400016 ()26470853 (PubMedID)2-s2.0-84959232625 (Scopus ID)
Note

QC 20160415

Available from: 2016-04-15 Created: 2016-04-11 Last updated: 2025-02-20Bibliographically approved
3. Bioactivation of Spider Silk with Basic Fibroblast Growth Factor for in Vitro Cell Culture: A Step toward Creation of Artificial ECM
Open this publication in new window or tab >>Bioactivation of Spider Silk with Basic Fibroblast Growth Factor for in Vitro Cell Culture: A Step toward Creation of Artificial ECM
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2018 (English)In: ACS Biomaterials Science & Engineering, E-ISSN 2373-9878, Vol. 4, no 9, p. 3384-3396Article in journal (Refereed) Published
Abstract [en]

Presentation of immobilized growth factors with retained bioactivity remains a challenge in the field of tissue engineering. In the present study, we propose a strategy to covalently conjugate a pleiotropic growth factor, basic fibroblast growth factor (bFGF) to a partial spider silk protein at gene level. The resulting silk-bFGF fusion protein has the propensity to self-assemble into silk-like fibers, and also surface coatings, as confirmed by quartz crystal microbalance studies. Functionality of the silk-bFGF coating to bind its cognate receptor was confirmed with surface plasmon resonance studies. As a step toward the creation of an artificial ECM, the silk-bFGF protein was mixed with FN-silk, an engineered spider silk protein with enhanced cell adhesive properties. Bioactivity of the thereby obtained combined silk was confirmed by successful culture of primary human endothelial cells on coatings and integrated within fibers, even in culture medium without supplemented growth factors. Together, these findings show that silk materials bioactivated with growth factors can be used for in vitro cell culture studies, and have potential as a tissue engineering scaffold.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2018
Keywords
artificial ECM, basic fibroblast growth factor, mammalian cell culture, recombinant spider silk
National Category
Biomaterials Science
Identifiers
urn:nbn:se:kth:diva-235446 (URN)10.1021/acsbiomaterials.8b00844 (DOI)000444526900025 ()33435072 (PubMedID)2-s2.0-85052322322 (Scopus ID)
Note

QC 20180927

Available from: 2018-09-27 Created: 2018-09-27 Last updated: 2024-03-18Bibliographically approved
4. Artificial VEGFR2-Specific Growth Factors Demonstrate Agonistic Effects in Both Soluble Form and When Immobilized Via Spider Silk
Open this publication in new window or tab >>Artificial VEGFR2-Specific Growth Factors Demonstrate Agonistic Effects in Both Soluble Form and When Immobilized Via Spider Silk
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(English)Manuscript (preprint) (Other academic)
National Category
Medical and Health Sciences
Identifiers
urn:nbn:se:kth:diva-235674 (URN)
Note

QC 20181009

Available from: 2018-10-02 Created: 2018-10-02 Last updated: 2022-06-26Bibliographically approved

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