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Edge-Based Graph Neural Networks for Cell-Graph Modeling and Prediction
KTH, School of Electrical Engineering and Computer Science (EECS).
Karolinska Institutet, Stockholm, Sweden.
Karolinska Institutet, Stockholm, Sweden.
KTH, School of Electrical Engineering and Computer Science (EECS), Computer Science, Theoretical Computer Science, TCS.ORCID iD: 0000-0002-9706-5008
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Number of Authors: 62023 (English)In: Information Processing in Medical Imaging - 28th International Conference, IPMI 2023, Proceedings, Springer Nature , 2023, p. 265-277Conference paper, Published paper (Refereed)
Abstract [en]

Identification and classification of cell-graph features using graph-neural networks (GNNs) has been shown to be useful in digital pathology. In this work, we consider the role of edge labels in cell-graph modeling, including histological modeling techniques, edge aggregation in GNN architectures, and edge label prediction. We propose EAGNN (Edge Aggregated GNN), a new GNN model that aggregates both node and edge label information to take advantage of topological information about cellular data and facilitate edge label prediction. We introduce new edge label features that improve histological modeling and prediction. We evaluate our EAGNN model for the task of detecting the presence and location of the basement membrane in oral mucosal tissue, as a proof-of-concept application.

Place, publisher, year, edition, pages
Springer Nature , 2023. p. 265-277
Keywords [en]
Basement Membrane, Cell-Graph, Digital Pathology, Graph Neural Network, Oral Mucosa
National Category
Computer Sciences
Identifiers
URN: urn:nbn:se:kth:diva-334530DOI: 10.1007/978-3-031-34048-2_21ISI: 001116102900021Scopus ID: 2-s2.0-85163966942OAI: oai:DiVA.org:kth-334530DiVA, id: diva2:1790595
Conference
28th International Conference on Information Processing in Medical Imaging, IPMI 2023, San Carlos de Bariloche, Argentina, Jun 18 2023 - Jun 23 2023
Note

Part of ISBN 978-3-031-34047-5

QC 20231123

Available from: 2023-08-23 Created: 2023-08-23 Last updated: 2024-01-16Bibliographically approved

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Hasegawa, TaiMeinke, KarlNair, Aravind

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Hasegawa, TaiMeinke, KarlSugars, Rachael V.Nair, Aravind
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