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Exploring the Stability and Substrate Profile of Transaminase from Silicibacter pomeroyi with Ancestral Sequence Reconstruction
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Industrial Biotechnology.ORCID iD: 0009-0005-2901-1410
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Industrial Biotechnology.ORCID iD: 0009-0002-4140-918X
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Industrial Biotechnology.ORCID iD: 0000-0001-7602-1228
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Industrial Biotechnology.
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2025 (English)In: ChemBioChem, ISSN 1439-4227, E-ISSN 1439-7633, Vol. 26, no 13Article in journal (Refereed) Published
Abstract [en]

Amine transaminases (ATAs), belonging to the class III transaminases within the superfamily of pyridoxal-5 '-phosphate-dependent enzymes, catalyze transamination reactions between amino donors and amino acceptors. These enzymes are particularly appealing for their role in stereospecific synthesis of chiral amines. However, the stability of most ATAs is not satisfying, limiting their suitability for industrial applications. Among them, the amine transaminase from Silicibacter pomeroyi (Sp-ATA) has drawn attention due to its high activity and broad substrate scope under mild conditions and high pH. Nevertheless, maintaining the activity at higher temperatures is a challenge. Previous studies to enhance enzyme function through directed evolution have shown promising results, yet predicting the cooperative effects of individual stabilizing mutations remains challenging. An alternative strategy is ancestral sequence reconstruction (ASR), which is based on gene sequences to create a more or less artificial phylogenetic tree. This study aims to leverage ASR techniques to explore the thermostability, solvent tolerance, and substrate profile of Sp-ATA, to find more stable transaminases. By using Sp-ATA as a template and incorporating insights from ancestral sequences, this strategy offers a promising approach for developing robust biocatalysts suitable for industrial applications.

Place, publisher, year, edition, pages
Wiley , 2025. Vol. 26, no 13
Keywords [en]
ancestral sequence reconstruction, Silicibacter pomeroyi, stability, omega-transaminase
National Category
Biocatalysis and Enzyme Technology Molecular Biology
Research subject
Biotechnology
Identifiers
URN: urn:nbn:se:kth:diva-368388DOI: 10.1002/cbic.202500155ISI: 001499843900001PubMedID: 40279196Scopus ID: 2-s2.0-105006841574OAI: oai:DiVA.org:kth-368388DiVA, id: diva2:1989240
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QC 20250815

Available from: 2025-08-15 Created: 2025-08-15 Last updated: 2025-08-15Bibliographically approved

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Zhao, LuyaoThongrakon, Bhu-BhudGautom, TrishnamoniSahlberg, ViktorBerglund, Per

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