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Textile and Paper Microfluidic Platforms for Electroanalytical Nucleic Acid Testing
KTH, Skolan för kemi, bioteknologi och hälsa (CBH), Fiber- och polymerteknologi, Fiberteknologi. KTH.ORCID-id: 0000-0001-7002-1382
2021 (engelsk)Doktoravhandling, med artikler (Annet vitenskapelig)
Abstract [en]

Rapid and accurate near-patient diagnostic tests outside well-equipped laboratories are essential in the fight against outbreaks of infectious diseases, especially when these can turn into pandemics. As severe acute respiratory syndrome CoV 2 (SARS-CoV-2) is the latest but probably not the last pandemic of the 21st century. Nucleic acid amplification tests (NAATs) identify pathogens at the molecular level by targeting specific gene sequences. NAATs are currently the gold standard of molecular diagnostics, given their reliability, sensitivity, and specificity. In addition, NAATs can provide quantitative results with a short turnaround time compared to conventional immunoassays or culturing methods. However, most NAATs necessitate centralized laboratories and trained health professionals and, to a large extend, fail to be point-of-care(POC).The biosensing field was inspired by the micro electronics revolution in the1980s, which led to the emergence of the micro-total analysis systems (μTAS)concept. μTAS was envisioned to miniaturized laboratory-based tests in single microfluidic devices. The combination of POC NAATs with μTAS can offer rapid, sensitive, and specific diagnostic tools of great importance in tackling diseases.In this thesis, we have utilized paper and textile materials as a platform for developing μTAS. These materials possess many features necessary for advanced μTAS, such as the ability to transport liquids, store reagents and embed electronic functions, making them ideal for integrating affordable, portable, and easy to manufacture μTAS for NAATs.We have specially developed NAATs with paper-based and thread-based electrochemical readout to provide quantitative responses with high sensitivity, specificity, and the possibility to connect to portable digital electronics. This work paves the way for robust sample-to-answer digital POC NAATs.

Abstract [sv]

Snabba och noggranna diagnostiska tester som utförs nära patienten utanför välutrustade laboratorier är det mest avgörande sättet att ta itu med smittsamma sjukdomar, som i värsta fall kan förvandlas till en pandemi.Severe acute respiratory syndrome coronavirus 2 (SARS-CoV2) är den senaste men förmodligen inte den sista pandemin under 2000-talet.Nukleinsyraamplifieringstest (NAAT) identifierar patogener på en molekylär nivå genom att rikta in på specifika gensekvenser. NAAT är för tillfället den gyllene standarden för molekylär diagnostisk teknik med tanke på desstillförlitlighet, känslighet, och specificitet Utöver detta ger NAAT kvantitativa resultat med en kort behandlingstid i motsats till konventionella immunanalyser eller odlingsmetoder. De flesta NAAT-metoder kräver dock centraliserade laboratorier och utbildad personal och är därmed inte anpassade för självtest nära patienten.Biosensorsfältet var inspirerat av mikroelektronikrevolutionen på 1980-talet, vilket ledde till uppkomsten av konceptet mikrototalanalyssystem(μTAS). Dessa system har som syfte att miniatyrisera laboratoriebaserade tester genom att utföra alla steg i enstaka mikrofluidanordningar.Kombineringen av patientnära NAAT-tester med μTAS kan därför erbjuda snabba, känsliga och specifika diagnostikverktyg och därmed ha stor påverkan för att förhindra överföring av infektionssjukdomar. I den här avhandlingen har vi använt papper och textila material som en platform utveckling av μTAS.Dessa material har många egenskaper som är nödvändiga för μTAS såsom förmågan att transportera vätskor, lagra reagenser och att integrera elektroniska funktioner, vilket gör dem ideala för att integrera prisvärda, bärbara och lättillverkade μTAS för NAAT-tester. Vi har speciellt utvecklat NAAT-tekniker med papper- och trådbaserad elektrokemisk avläsning som ger kvantitativa svar med hög känslighet,specificitet och möjlighet att ansluta till bärbara elektroniska enheter. Detta arbete banar vägen för robusta, digitala och patientnära prov-till-svar-tester som baseras på NAAT-teknik.

sted, utgiver, år, opplag, sider
Stockholm, Sweden: KTH Royal Institute of Technology, 2021. , s. 61
Serie
TRITA-CBH-FOU ; 2021:33
HSV kategori
Forskningsprogram
Fiber- och polymervetenskap
Identifikatorer
URN: urn:nbn:se:kth:diva-302471OAI: oai:DiVA.org:kth-302471DiVA, id: diva2:1597084
Disputas
2021-10-18, Kollegiesalen, Brinellvägen 8, KTH, Stockholm, 14:00 (engelsk)
Opponent
Veileder
Forskningsfinansiär
EU, European Research Council, 715268
Merknad

QC 2021-09-24

Tilgjengelig fra: 2021-09-24 Laget: 2021-09-24 Sist oppdatert: 2022-10-31bibliografisk kontrollert
Delarbeid
1. Nitrocellulose-bound achromopeptidase for point-of-care nucleic acid tests
Åpne denne publikasjonen i ny fane eller vindu >>Nitrocellulose-bound achromopeptidase for point-of-care nucleic acid tests
Vise andre…
2021 (engelsk)Inngår i: Scientific Reports, E-ISSN 2045-2322, Vol. 11, nr 1, artikkel-id 6140Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Enzymes are the cornerstone of modern biotechnology. Achromopeptidase (ACP) is a well-known enzyme that hydrolyzes a number of proteins, notably proteins on the surface of Gram-positive bacteria. It is therefore used for sample preparation in nucleic acid tests. However, ACP inhibits DNA amplification which makes its integration difficult. Heat is commonly used to inactivate ACP, but it can be challenging to integrate heating into point-of-care devices. Here, we use recombinase polymerase amplification (RPA) together with ACP, and show that when ACP is immobilized on nitrocellulose paper, it retains its enzymatic function and can easily and rapidly be activated using agitation. The nitrocellulose-bound ACP does, however, not leak into the solution, preventing the need for deactivation through heat or by other means. Nitrocellulose-bound ACP thus opens new possibilities for paper-based Point-of-Care (POC) devices.

sted, utgiver, år, opplag, sider
Springer Nature, 2021
HSV kategori
Identifikatorer
urn:nbn:se:kth:diva-292300 (URN)10.1038/s41598-021-85481-2 (DOI)000630510600002 ()33731748 (PubMedID)2-s2.0-85102733962 (Scopus ID)
Merknad

QC 20210406

Tilgjengelig fra: 2021-04-06 Laget: 2021-04-06 Sist oppdatert: 2022-11-03bibliografisk kontrollert
2. Electrochemical Detection of Genomic DNA Utilizing Recombinase Polymerase Amplification and Stem-Loop Probe
Åpne denne publikasjonen i ny fane eller vindu >>Electrochemical Detection of Genomic DNA Utilizing Recombinase Polymerase Amplification and Stem-Loop Probe
Vise andre…
2020 (engelsk)Inngår i: ACS Omega, E-ISSN 2470-1343, Vol. 5, nr 21, s. 12103-12109Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Nucleic acid tests integrated into digital point-of-care (POC) diagnostic systems have great potential for the future of health care. However, current methods of DNA amplification and detection require bulky and expensive equipment, many steps, and long process times, which complicate their integration into POC devices. We have combined an isothermal DNA amplification method, recombinase polymerase amplification, with an electrochemical stem-loop (S-L) probe DNA detection technique. By combining these methods, we have created a system that is able to specifically amplify and detect as few as 10 copies/mu L Staphylococcus epidermidis DNA with a total time to result of 70-75 min.

sted, utgiver, år, opplag, sider
AMER CHEMICAL SOC, 2020
HSV kategori
Identifikatorer
urn:nbn:se:kth:diva-277660 (URN)10.1021/acsomega.0c00341 (DOI)000538419300024 ()32548389 (PubMedID)2-s2.0-85085747680 (Scopus ID)
Merknad

QC 20200630

Tilgjengelig fra: 2020-06-30 Laget: 2020-06-30 Sist oppdatert: 2022-12-07bibliografisk kontrollert
3. Woven Electroanalytical Biosensor for Nucleic AcidAmplification Tests
Åpne denne publikasjonen i ny fane eller vindu >>Woven Electroanalytical Biosensor for Nucleic AcidAmplification Tests
Vise andre…
2021 (engelsk)Inngår i: Advanced Healthcare Materials, ISSN 2192-2640, E-ISSN 2192-2659, Vol. 10, nr 11, s. 2100034-Artikkel i tidsskrift (Fagfellevurdert) [Kunstnerisk arbeiden] Published
Abstract [en]

Fiber-based biosensors enable a new approach in analytical diagnosticdevices. The majority of textile-based biosensors, however, rely oncolorimetric detection. Here a woven biosensor that integrates microfluidicsstructures in combination with an electroanalytical readout based on athiol-self-assembled monolayer (SAM) for Nucleic Acid Amplification Testing,NAATs is shown. Two types of fiber-based electrodes are systematicallycharacterized: pure gold microwires (bond wire) and off-the-shelf plasmagold-coated polyester multifilament threads to evaluate their potential to formSAMs on their surface and their electrochemical performance in woven textile.A woven electrochemical DNA (E-DNA) sensor using a SAM-based stem-loopprobe-modified gold microwire is fabricated. These sensors can specificallydetect unpurified, isothermally amplified genomic DNA of Staphylococcusepidermidis (10 copies/μL) by recombinase polymerase amplification (RPA).This work demonstrates that textile-based biosensors have the potential forintegrating and being employed as automated, sample-to-answer analyticaldevices for point-of-care (POC) diagnostics.

sted, utgiver, år, opplag, sider
Wiley-VCH Verlagsgesellschaft, 2021
Emneord
Woven electroanalytical microfluidic devices, DNA biosensors, Fiber electrodes, Self assembled monolayers (SAM)
HSV kategori
Identifikatorer
urn:nbn:se:kth:diva-301909 (URN)10.1002/adhm.202100034 (DOI)000645682300001 ()33930257 (PubMedID)2-s2.0-85105138834 (Scopus ID)
Forskningsfinansiär
EU, European Research Council
Merknad

QC 20210917

Tilgjengelig fra: 2021-09-14 Laget: 2021-09-14 Sist oppdatert: 2022-12-07bibliografisk kontrollert
4. Electroanalytical Paper based Nucleic Acid Amplification Tests with Integrated Thread Electrodes
Åpne denne publikasjonen i ny fane eller vindu >>Electroanalytical Paper based Nucleic Acid Amplification Tests with Integrated Thread Electrodes
(engelsk)Artikkel i tidsskrift (Fagfellevurdert) [Kunstnerisk arbeiden] Submitted
HSV kategori
Identifikatorer
urn:nbn:se:kth:diva-302112 (URN)
Forskningsfinansiär
EU, European Research Council
Merknad

QC 20210923

Tilgjengelig fra: 2021-09-16 Laget: 2021-09-16 Sist oppdatert: 2022-11-03bibliografisk kontrollert

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