kth.sePublikationer KTH
Ändra sökning
RefereraExporteraLänk till posten
Permanent länk

Direktlänk
Referera
Referensformat
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Annat format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annat språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression
Visa övriga samt affilieringar
2024 (Engelska)Ingår i: Nature Cell Biology, ISSN 1465-7392, E-ISSN 1476-4679, Vol. 26, nr 7, s. 1176-1186Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Transcription factor (TF) proteins regulate gene activity by binding to regulatory regions, most importantly at gene promoters. Many genes have alternative promoters (APs) bound by distinct TFs. The role of differential TF activity at APs during tumour development is poorly understood. Here we show, using deep RNA sequencing in 274 biopsies of benign prostate tissue, localized prostate tumours and metastatic castration-resistant prostate cancer, that AP usage increases as tumours progress and APs are responsible for a disproportionate amount of tumour transcriptional activity. Expression of the androgen receptor (AR), the key driver of prostate tumour activity, is correlated with elevated AP usage. We identified AR, FOXA1 and MYC as potential drivers of AP activation. DNA methylation is a likely mechanism for AP activation during tumour progression and lineage plasticity. Our data suggest that prostate tumours activate APs to magnify the transcriptional impact of tumour drivers, including AR and MYC.

Ort, förlag, år, upplaga, sidor
Springer Nature , 2024. Vol. 26, nr 7, s. 1176-1186
Nationell ämneskategori
Cancer och onkologi
Identifikatorer
URN: urn:nbn:se:kth:diva-356705DOI: 10.1038/s41556-024-01438-3ISI: 001246007600001PubMedID: 38871824Scopus ID: 2-s2.0-85195841765OAI: oai:DiVA.org:kth-356705DiVA, id: diva2:1914940
Anmärkning

QC 20241203

Tillgänglig från: 2024-11-20 Skapad: 2024-11-20 Senast uppdaterad: 2024-12-03Bibliografiskt granskad

Open Access i DiVA

Fulltext saknas i DiVA

Övriga länkar

Förlagets fulltextPubMedScopus

Person

Lundberg, Arian

Sök vidare i DiVA

Av författaren/redaktören
Zhang, MengSjöström, MartinShrestha, RaunakLundberg, ArianDang, Ha X.Febbo, Phillip G.Alumkal, Joshi J.Alumkal, Joshi J.Feng, Felix Y.Quigley, David A.Maher, Christopher A.Feng, Felix Y.Quigley, David A.
I samma tidskrift
Nature Cell Biology
Cancer och onkologi

Sök vidare utanför DiVA

GoogleGoogle Scholar

doi
pubmed
urn-nbn

Altmetricpoäng

doi
pubmed
urn-nbn
Totalt: 44 träffar
RefereraExporteraLänk till posten
Permanent länk

Direktlänk
Referera
Referensformat
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Annat format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annat språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf