kth.sePublications KTH
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Aurora 2.0: A fluorogenic dye library for expanding the capability of protein-adaptive differential scanning fluorimetry (paDSF)
Institute for Neurodegenerative Diseases, University of California, San Francisco, CA 94158, USA; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
Institute for Neurodegenerative Diseases, University of California, San Francisco, CA 94158, USA.
Institute for Neurodegenerative Diseases, University of California, San Francisco, CA 94158, USA.
Institute for Neurodegenerative Diseases, University of California, San Francisco, CA 94158, USA.
Show others and affiliations
2025 (English)In: SLAS Discovery, ISSN 2472-5560, E-ISSN 2472-5552, Vol. 35, article id 100259Article in journal (Refereed) Published
Abstract [en]

Differential Scanning Fluorimetry (DSF) is a biophysical assay that is used to estimate protein stability in vitro. In a DSF experiment, the increased fluorescence of a solvatochromatic dye, such as Sypro Orange, is used to detect the unfolding of a protein during heating. However, Sypro Orange is only compatible with a minority of proteins (< 30 %), limiting the scope of this method. We recently reported that protein-adaptive DSF (paDSF) can partially solve this problem, wherein the protein is initially pre-screened against ∼300 chemically diverse dyes, termed the Aurora collection. While this approach significantly improves the number of targets amenable to DSF, it still fails to produce protein-dye pairs for some proteins. Here, we report the expansion of the dye collection to Aurora 2.0, which includes a total of 517 structurally diverse molecules and multiple new chemotypes. To assess performance, these dyes were screened against a panel of ∼100 proteins, which were selected, in part, to represent the most challenging targets (e.g. small size). From this effort, Aurora 2.0 achieved an impressive success rate of 94 %, including producing dyes for some targets that were not matched in the original collection. These findings support the idea that larger, more chemically diverse libraries improve the likelihood of detecting melting transitions across a wider range of proteins. We propose that Aurora 2.0 makes paDSF an increasingly powerful method for studying protein stability, ligand binding and other biophysical properties in high throughput.

Place, publisher, year, edition, pages
Elsevier BV , 2025. Vol. 35, article id 100259
Keywords [en]
Binding assay, Fluorescent dye, Fluorescent probes, High throughput screening, Protein stability, Thermal shift assay, Thermofluor
National Category
Molecular Biology Biophysics
Identifiers
URN: urn:nbn:se:kth:diva-369348DOI: 10.1016/j.slasd.2025.100259ISI: 001560571800001PubMedID: 40784560Scopus ID: 2-s2.0-105013353309OAI: oai:DiVA.org:kth-369348DiVA, id: diva2:1995102
Note

QC 20250904

Available from: 2025-09-04 Created: 2025-09-04 Last updated: 2025-12-08Bibliographically approved

Open Access in DiVA

No full text in DiVA

Other links

Publisher's full textPubMedScopus

Authority records

Nilsson, Peter

Search in DiVA

By author/editor
Nilsson, Peter
By organisation
Science for Life Laboratory, SciLifeLabAffinity Proteomics
In the same journal
SLAS Discovery
Molecular BiologyBiophysics

Search outside of DiVA

GoogleGoogle Scholar

doi
pubmed
urn-nbn

Altmetric score

doi
pubmed
urn-nbn
Total: 29 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf