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Diversity and structural-functional insights of alpha-solenoid proteins
KTH, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Protein Science, Protein Technology. Univ Padua, Dept Biomed Sci, via U Bassi 58 B, I-35121 Padua, Italy..
Univ Padua, Dept Biomed Sci, via U Bassi 58 B, I-35121 Padua, Italy..
Univ Nacl La Plata, Fac Ciencias Exactas, Dept Ciencias Biol, Lab Invest & Desarrollo Bioact LIDeB, La Plata, Buenos Aires, Argentina..
Univ Nacl Quilmes, Lab Farmacol Mol, Bernal, Buenos Aires, Argentina..ORCID iD: 0000-0002-2926-2237
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2024 (English)In: Protein Science, ISSN 0961-8368, E-ISSN 1469-896X, Vol. 33, no 11, article id e5189Article, review/survey (Refereed) Published
Abstract [en]

Alpha-solenoids are a significant and diverse subset of structured tandem repeat proteins (STRPs) that are important in various domains of life. This review examines their structural and functional diversity and highlights their role in critical cellular processes such as signaling, apoptosis, and transcriptional regulation. Alpha-solenoids can be classified into three geometric folds: low curvature, high curvature, and corkscrew, as well as eight subfolds: ankyrin repeats; Huntingtin, elongation factor 3, protein phosphatase 2A, and target of rapamycin; armadillo repeats; tetratricopeptide repeats; pentatricopeptide repeats; Pumilio repeats; transcription activator-like; and Sel-1 and Sel-1-like repeats. These subfolds represent distinct protein families with unique structural properties and functions, highlighting the versatility of alpha-solenoids. The review also discusses their association with disease, highlighting their potential as therapeutic targets and their role in protein design. Advances in state-of-the-art structure prediction methods provide new opportunities and challenges in the functional characterization and classification of this kind of fold, emphasizing the need for continued development of methods for their identification and proper data curation and deposition in the main databases.

Place, publisher, year, edition, pages
Wiley , 2024. Vol. 33, no 11, article id e5189
Keywords [en]
alpha-solenoids, ankyrins, armadillo repeats, HEAT, structured tandem repeats, tandem repeat classification, TPR repeats
National Category
Biochemistry Molecular Biology
Identifiers
URN: urn:nbn:se:kth:diva-357787DOI: 10.1002/pro.5189ISI: 001368214700001PubMedID: 39465903Scopus ID: 2-s2.0-85207813713OAI: oai:DiVA.org:kth-357787DiVA, id: diva2:1921825
Note

QC 20241217

Available from: 2024-12-17 Created: 2024-12-17 Last updated: 2025-02-20Bibliographically approved

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