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The Circulating Proteome-Technological Developments, Current Challenges, and Future Trends
Max Planck Inst Biochem, Dept Prote & Signal Transduct, D-82152 Martinsried, Germany..
Seer Inc, Redwood City, CA 94065 USA.;BISTel, San Jose, CA 95134 USA..
Karolinska Inst, Dept Oncol Pathol, Sci Life Lab, S-17165 Stockholm, Sweden..
Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth GmbH, Metabol & Prote Core MPC, D-80939 Munich, Germany..
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2024 (English)In: Journal of Proteome Research, ISSN 1535-3893, E-ISSN 1535-3907, Vol. 23, no 12, p. 5279-5295Article, review/survey (Refereed) Published
Abstract [en]

Recent improvements in proteomics technologies have fundamentally altered our capacities to characterize human biology. There is an ever-growing interest in using these novel methods for studying the circulating proteome, as blood offers an accessible window into human health. However, every methodological innovation and analytical progress calls for reassessing our existing approaches and routines to ensure that the new data will add value to the greater biomedical research community and avoid previous errors. As representatives of HUPO's Human Plasma Proteome Project (HPPP), we present our 2024 survey of the current progress in our community, including the latest build of the Human Plasma Proteome PeptideAtlas that now comprises 4608 proteins detected in 113 data sets. We then discuss the updates of established proteomics methods, emerging technologies, and investigations of proteoforms, protein networks, extracellualr vesicles, circulating antibodies and microsamples. Finally, we provide a prospective view of using the current and emerging proteomics tools in studies of circulating proteins.

Place, publisher, year, edition, pages
American Chemical Society (ACS) , 2024. Vol. 23, no 12, p. 5279-5295
Keywords [en]
biomarker discovery, blood, plasma, serum, PTM, extracellular vesicle, microsampling, affinity, mass spectrometry, PeptideAtlas
National Category
Molecular Biology
Identifiers
URN: urn:nbn:se:kth:diva-358692DOI: 10.1021/acs.jproteome.4c00586ISI: 001372083100001PubMedID: 39479990Scopus ID: 2-s2.0-85208358786OAI: oai:DiVA.org:kth-358692DiVA, id: diva2:1929433
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QC 20250120

Available from: 2025-01-20 Created: 2025-01-20 Last updated: 2025-01-20Bibliographically approved

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Edfors, FredrikSchwenk, Jochen M.

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