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Coarse-Graining and Classifying Massive High-Throughput XFEL Datasets of Crystallization in Supercooled Water
Department of Physics, National University of Singapore, Singapore.
KTH, School of Engineering Sciences (SCI), Applied Physics, Biophysics.ORCID iD: 0000-0002-3422-1325
KTH, School of Engineering Sciences (SCI), Applied Physics, Bio-Opto-Nano Physics.ORCID iD: 0000-0003-2793-5052
Department of Physics, National University of Singapore, Singapore; Department of Biological Sciences, National University of Singapore, Singapore.
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Number of Authors: 392025 (English)In: Crystals, ISSN 2073-4352, Vol. 15, no 8, article id 734Article in journal (Refereed) Published
Abstract [en]

Ice crystallization in supercooled water is a complex phenomenon with far-reaching implications across scientific disciplines, including cloud formation physics and cryopreservation. Experimentally studying such complexity can be a highly data-driven and data-hungry endeavor because of the need to record rare events that cannot be triggered on demand. Here, we describe such an experiment comprising 561 million images of X-ray free-electron laser (XFEL) diffraction patterns (2.3 (Formula presented.) raw data) spanning the disorder-to-order transition in micrometer-sized supercooled water droplets. To effectively analyze these patterns, we propose a data reduction (i.e., coarse-graining) and dimensionality reduction (i.e., principal component analysis) strategy. We show that a simple set of criteria on this reduced dataset can efficiently classify these patterns in the absence of reference diffraction signatures, which we validated using more precise but computationally expensive unsupervised machine learning techniques. For hit-finding, our strategy attained 98% agreement with our cross-validation. We speculate that these strategies may be generalized to other types of large high-dimensional datasets generated at high-throughput XFEL facilities.

Place, publisher, year, edition, pages
MDPI AG , 2025. Vol. 15, no 8, article id 734
Keywords [en]
classification, crystallization, machine learning, XFEL
National Category
Other Physics Topics Bioinformatics (Computational Biology)
Identifiers
URN: urn:nbn:se:kth:diva-369616DOI: 10.3390/cryst15080734ISI: 001557379400001Scopus ID: 2-s2.0-105014514977OAI: oai:DiVA.org:kth-369616DiVA, id: diva2:1997132
Note

QC 20250911

Available from: 2025-09-11 Created: 2025-09-11 Last updated: 2025-12-08Bibliographically approved

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Hammarström, BjörnSellberg, Jonas A.

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